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seqtrie  

Radix Tree and Trie-Based String Distances
View on CRAN: Click here


Download and install seqtrie package within the R console
Install from CRAN:
install.packages("seqtrie")

Install from Github:
library("remotes")
install_github("cran/seqtrie")

Install by package version:
library("remotes")
install_version("seqtrie", "0.2.9")



Attach the package and use:
library("seqtrie")
Maintained by
Travers Ching
[Scholar Profile | Author Map]
First Published: 2023-09-01
Latest Update: 2024-01-27
Description:
A collection of Radix Tree and Trie algorithms for finding similar sequences and calculating sequence distances (Levenshtein and other distance metrics). This work was inspired by a trie implementation in Python: "Fast and Easy Levenshtein distance using a Trie." Hanov (2011) .
How to cite:
Travers Ching (2023). seqtrie: Radix Tree and Trie-Based String Distances. R package version 0.2.9, https://cran.r-project.org/web/packages/seqtrie. Accessed 24 Apr. 2025.
Previous versions and publish date:
0.2.5 (2023-09-01 13:00), 0.2.6 (2024-01-27 08:30), 0.2.8 (2024-05-05 01:40)
Other packages that cited seqtrie R package
View seqtrie citation profile
Other R packages that seqtrie depends, imports, suggests or enhances
Complete documentation for seqtrie
Functions, R codes and Examples using the seqtrie R package
Some associated functions: RadixForest . RadixTree . covid_cdr3 . dist_matrix . dist_pairwise . dist_search . generate_cost_matrix . split_search . 
Some associated R codes: RadixForest.R . RadixTree.R . RadixTree_search_helpers.R . RcppExports.R . covid_cdr3.R . pairwise.R . utils.R . zzz.R .  Full seqtrie package functions and examples
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