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seqgendiff  

RNA-Seq Generation/Modification for Simulation
View on CRAN: Click here


Download and install seqgendiff package within the R console
Install from CRAN:
install.packages("seqgendiff")

Install from Github:
library("remotes")
install_github("cran/seqgendiff")

Install by package version:
library("remotes")
install_version("seqgendiff", "1.2.4")



Attach the package and use:
library("seqgendiff")
Maintained by
David Gerard
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-08-05
Latest Update: 2022-02-19
Description:
Generates/modifies RNA-seq data for use in simulations. We provide a suite of functions that will add a known amount of signal to a real RNA-seq dataset. The advantage of using this approach over simulating under a theoretical distribution is that common/annoying aspects of the data are more preserved, giving a more realistic evaluation of your method. The main functions are select_counts(), thin_diff(), thin_lib(), thin_gene(), thin_2group(), thin_all(), and effective_cor(). See Gerard (2020) for details on the implemented methods.
How to cite:
David Gerard (2019). seqgendiff: RNA-Seq Generation/Modification for Simulation. R package version 1.2.4, https://cran.r-project.org/web/packages/seqgendiff. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.1.0 (2019-08-05 14:20), 1.1.1 (2019-09-10 01:30), 1.2.1 (2020-02-24 23:30), 1.2.2 (2020-05-24 21:20), 1.2.3 (2022-02-19 17:30)
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