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sensiPhy  

Sensitivity Analysis for Comparative Methods
View on CRAN: Click here


Download and install sensiPhy package within the R console
Install from CRAN:
install.packages("sensiPhy")

Install from Github:
library("remotes")
install_github("cran/sensiPhy")

Install by package version:
library("remotes")
install_version("sensiPhy", "0.8.5")



Attach the package and use:
library("sensiPhy")
Maintained by
Gustavo Paterno
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-07-18
Latest Update: 2020-04-02
Description:
An implementation of sensitivity analysis for phylogenetic comparative methods. The package is an umbrella of statistical and graphical methods that estimate and report different types of uncertainty in PCM: (i) Species Sampling uncertainty (sample size; influential species and clades). (ii) Phylogenetic uncertainty (different topologies and/or branch lengths). (iii) Data uncertainty (intraspecific variation and measurement error).
How to cite:
Gustavo Paterno (2016). sensiPhy: Sensitivity Analysis for Comparative Methods. R package version 0.8.5, https://cran.r-project.org/web/packages/sensiPhy. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.5.0 (2016-07-18 20:37), 0.6.0 (2017-01-14 00:59), 0.7.0 (2017-09-07 11:44), 0.8.0 (2017-12-15 08:11), 0.8.1 (2018-01-23 05:22), 0.8.2 (2018-06-12 22:29), 0.8.3 (2018-09-11 14:50), 0.8.4 (2019-12-10 21:50)
Other packages that cited sensiPhy R package
View sensiPhy citation profile
Other R packages that sensiPhy depends, imports, suggests or enhances
Complete documentation for sensiPhy
Functions, R codes and Examples using the sensiPhy R package
Some associated functions: alien.data . alien . alien.phy . clade_continuous . clade_discrete . clade_phyglm . clade_phylm . clade_physig . influ_continuous . influ_discrete . influ_phyglm . influ_phylm . influ_physig . intra_clade_phyglm . intra_clade_phylm . intra_influ_phyglm . intra_influ_phylm . intra_phyglm . intra_phylm . intra_physig . intra_samp_phyglm . intra_samp_phylm . match_dataphy . miss.phylo.d . primates.data . primates . primates.phy . samp_continuous . samp_discrete . samp_phyglm . samp_phylm . samp_physig . sensiPhy . sensi_plot.clade.physig . sensi_plot.influ.physig . sensi_plot.intra.physig . sensi_plot . sensi_plot.samp.physig . sensi_plot.sensiClade.TraitEvol . sensi_plot.sensiClade . sensi_plot.sensiInflu.TraitEvol . sensi_plot.sensiInflu . sensi_plot.sensiIntra . sensi_plot.sensiIntra_Clade . sensi_plot.sensiIntra_Influ . sensi_plot.sensiIntra_Samp . sensi_plot.sensiSamp.TraitEvol . sensi_plot.sensiSamp . sensi_plot.sensiTree.TraitEvol . sensi_plot.sensiTree . sensi_plot.sensiTree_Clade . sensi_plot.sensiTree_Influ . sensi_plot.sensiTree_Intra . sensi_plot.sensiTree_Samp . sensi_plot.tree.bd . sensi_plot.tree.physig . tree_bd . tree_clade_phyglm . tree_clade_phylm . tree_continuous . tree_discrete . tree_influ_phyglm . tree_influ_phylm . tree_intra_phyglm . tree_intra_phylm . tree_phyglm . tree_phylm . tree_physig . tree_samp_phyglm . tree_samp_phylm . 
Some associated R codes: clade_Discrete.R . clade_continuous.R . clade_phyglm.R . clade_phylm.R . clade_physig.R . document-data.R . influ_Discrete.R . influ_continuous.R . influ_phyglm.R . influ_phylm.R . influ_physig.R . intra_clade_phyglm.R . intra_clade_phylm.R . intra_influ_phyglm.R . intra_influ_phylm.R . intra_phyglm.R . intra_phylm.R . intra_physig.R . intra_samp_phyglm.R . intra_samp_phylm.R . match_dataphy.R . miss.phylo.d.R . print_methods.R . samp_Discrete.R . samp_continuous.R . samp_phyglm.R . samp_phylm.R . samp_physig.R . sensiPhy.R . sensi_plot.R . sensi_plot.clade.physig.R . sensi_plot.influ.physig.R . sensi_plot.samp.physig.R . sensi_plot.sensiClade.R . sensi_plot.sensiINTER_Clade.R . sensi_plot.sensiINTER_Influ.R . sensi_plot.sensiINTER_Samp.R . sensi_plot.sensiInflu.R . sensi_plot.sensiIntra.sensiTree.R . sensi_plot.sensiSamp.R . sensi_plot.tree.bd.R . sensi_plot.tree.physig.R . summary_methods.R . tree_Discrete.R . tree_bd.R . tree_clade_phyglm.R . tree_clade_phylm.R . tree_continuous.R . tree_influ_phyglm.R . tree_influ_phylm.R . tree_intra_phyglm.R . tree_intra_phylm.R . tree_phyglm.R . tree_phylm.R . tree_physig.R . tree_samp_phyglm.R . tree_samp_phylm.R . utils_internal.R . utils_plot.R .  Full sensiPhy package functions and examples
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