Other packages > Find by keyword >

segmenTier  

Similarity-Based Segmentation of Multidimensional Signals
View on CRAN: Click here


Download and install segmenTier package within the R console
Install from CRAN:
install.packages("segmenTier")

Install from Github:
library("remotes")
install_github("cran/segmenTier")

Install by package version:
library("remotes")
install_version("segmenTier", "0.1.2")



Attach the package and use:
library("segmenTier")
Maintained by
Rainer Machne
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-02-18
Latest Update: 2019-02-18
Description:
A dynamic programming solution to segmentation based on maximization of arbitrary similarity measures within segments. The general idea, theory and this implementation are described in Machne, Murray & Stadler (2017) . In addition to the core algorithm, the package provides time-series processing and clustering functions as described in the publication. These are generally applicable where a `k-means` clustering yields meaningful results, and have been specifically developed for clustering of the Discrete Fourier Transform of periodic gene expression data (`circadian' or `yeast metabolic oscillations'). This clustering approach is outlined in the supplemental material of Machne & Murray (2012) ), and here is used as a basis of segment similarity measures. Notably, the time-series processing and clustering functions can also be used as stand-alone tools, independent of segmentation, e.g., for transcriptome data already mapped to genes.
How to cite:
Rainer Machne (2019). segmenTier: Similarity-Based Segmentation of Multidimensional Signals. R package version 0.1.2, https://cran.r-project.org/web/packages/segmenTier. Accessed 30 Jan. 2025.
Previous versions and publish date:
No previous versions
Other packages that cited segmenTier R package
View segmenTier citation profile
Other R packages that segmenTier depends, imports, suggests or enhances
Complete documentation for segmenTier
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

WtTopsis  
Weighted Method for Multiple-Criteria Decision Making
Evaluation of alternatives based on multiple criteria using weighted technique for Order preference ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
kesernetwork  
Visualization of the KESER Network
A shiny app to visualize the knowledge networks for the code concepts. Using co-occurrence matrices ...
Download / Learn more Package Citations See dependency  
cinaR  
A Computational Pipeline for Bulk 'ATAC-Seq' Profiles
Differential analyses and Enrichment pipeline for bulk 'ATAC-seq' data analyses. This package combi ...
Download / Learn more Package Citations See dependency  
fastmit  
Fast Mutual Information Based Independence Test
A mutual information estimator based on k-nearest neighbor method proposed by A. Kraskov, et al. (20 ...
Download / Learn more Package Citations See dependency  
GGMncv  
Gaussian Graphical Models with Nonconvex Regularization
Estimate Gaussian graphical models with nonconvex penalties , including ...
Download / Learn more Package Citations See dependency  

23,580

R Packages

204,057

Dependencies

63,980

Author Associations

23,581

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA