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sdmTMB
View on CRAN: Click
here
Download and install sdmTMB package within the R console
Install from CRAN:
install.packages("sdmTMB")
Install from Github:
library("remotes")
install_github("cran/sdmTMB")
Install by package version:
library("remotes")
install_version("sdmTMB", "0.7.0")
Attach the package and use:
library("sdmTMB")
Maintained by
Sean C. Anderson
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.sdmTMB . https://github.com/pbs-assess/sdmTMB/issues . sdmTMB copyright details . https://pbs-assess.github.io/sdmTMB/ . https://github.com/pbs-assess/sdmTMB . sdmTMB citation info . sdmTMB results . sdmTMB.pdf . sdmTMB model description . sdmTMB_0.7.0.tar.gz . sdmTMB_0.7.0.zip . sdmTMB_0.7.0.zip . sdmTMB_0.7.0.zip . sdmTMB_0.7.0.tgz . sdmTMB_0.7.0.tgz . sdmTMB_0.7.0.tgz . sdmTMB_0.7.0.tgz . sdmTMB archive . https://CRAN.R-project.org/package=sdmTMB .
First Published: 2023-01-10
Latest Update: 2024-02-29
Description:
Implements spatial and spatiotemporal GLMMs (Generalized Linear
Mixed Effect Models) using 'TMB', 'fmesher', and the SPDE (Stochastic Partial
Differential Equation) Gaussian Markov random field approximation to
Gaussian random fields. One common application is for spatially explicit
species distribution models (SDMs).
See Anderson et al. (2022) .
How to cite:
Sean C. Anderson (2023). sdmTMB: Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB'. R package version 0.7.0, https://cran.r-project.org/web/packages/sdmTMB. Accessed 22 Apr. 2025.
Previous versions and publish date:
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Other R packages that sdmTMB depends,
imports, suggests or enhances
Complete documentation for sdmTMB
Functions, R codes and Examples using
the sdmTMB R package
Some associated functions: Effect.sdmTMB . add_barrier_mesh . add_utm_columns . dharma_residuals . emmeans.sdmTMB . extract_mcmc . families . gather_sims . get_index . get_index_sims . get_pars . ggplot2_installed . make_mesh . plot_anisotropy . plot_pc_matern . plot_smooth . predict.sdmTMB . priors . reexports . replicate_df . residuals.sdmTMB . run_extra_optimization . sanity . sdmTMB . sdmTMB_cv . sdmTMB_simulate . sdmTMB_stacking . sdmTMBcontrol . set_delta_model . simulate.sdmTMB . surveydata . tidy.sdmTMB . visreg_delta .
Some associated R codes: check.R . cross-val.R . crs.R . data.R . deprecated.R . emmeans.R . enum.R . extra-optimization.R . families.R . fit.R . gather-spread.R . get-index-sims.R . index.R . mesh.R . methods.R . plot-pc-matern.R . plot.R . predict.R . print.R . priors.R . residuals.R . smoothers.R . stacking.R . tidy.R . tmb-sim.R . utils.R . visreg.R . zzz.R . Full sdmTMB package functions and examples
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