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sctransform  

Variance Stabilizing Transformations for Single Cell UMI Data
View on CRAN: Click here


Download and install sctransform package within the R console
Install from CRAN:
install.packages("sctransform")

Install from Github:
library("remotes")
install_github("cran/sctransform")

Install by package version:
library("remotes")
install_version("sctransform", "0.4.1")



Attach the package and use:
library("sctransform")
Maintained by
Saket Choudhary
[Scholar Profile | Author Map]
First Published: 2018-11-18
Latest Update: 2023-10-19
Description:
A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija (2019) , and Choudhary and Satija (2022) for more details.
How to cite:
Saket Choudhary (2018). sctransform: Variance Stabilizing Transformations for Single Cell UMI Data. R package version 0.4.1, https://cran.r-project.org/web/packages/sctransform. Accessed 29 Mar. 2025.
Previous versions and publish date:
0.1.0 (2018-11-18 17:30), 0.2.0 (2019-04-12 14:32), 0.2.1 (2019-12-17 16:00), 0.3.1 (2020-10-08 14:00), 0.3.2 (2020-12-16 15:40), 0.3.3 (2022-01-13 09:20), 0.3.4 (2022-08-21 00:10), 0.3.5 (2022-09-21 19:10), 0.3 (2020-09-20 16:40), 0.4.0 (2023-09-19 06:50)
Other packages that cited sctransform R package
View sctransform citation profile
Other R packages that sctransform depends, imports, suggests or enhances
Complete documentation for sctransform
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