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scrm  

Simulating the Evolution of Biological Sequences
View on CRAN: Click here


Download and install scrm package within the R console
Install from CRAN:
install.packages("scrm")

Install from Github:
library("remotes")
install_github("cran/scrm")

Install by package version:
library("remotes")
install_version("scrm", "1.7.5")



Attach the package and use:
library("scrm")
Maintained by
Dirk Metzler
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-10-21
Latest Update: 2024-01-08
Description:
A coalescent simulator that allows the rapid simulation of biological sequences under neutral models of evolution, see Staab et al. (2015) . Different to other coalescent based simulations, it has an optional approximation parameter that allows for high accuracy while maintaining a linear run time cost for long sequences. It is optimized for simulating massive data sets as produced by Next- Generation Sequencing technologies for up to several thousand sequences.
How to cite:
Dirk Metzler (2014). scrm: Simulating the Evolution of Biological Sequences. R package version 1.7.5, https://cran.r-project.org/web/packages/scrm. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.3-1 (2014-10-21 17:48), 1.3-2 (2014-10-22 13:13), 1.3-3 (2014-11-18 11:19), 1.5.0-1 (2015-04-11 07:39), 1.6.0-2 (2015-06-07 08:24), 1.7.2-0 (2016-12-11 16:37), 1.7.2-1 (2017-12-08 01:09), 1.7.2-3 (2018-06-18 21:07), 1.7.2-4 (2018-06-30 23:10), 1.7.3-1 (2018-11-19 21:40), 1.7.4-0 (2022-02-14 10:00)
Other packages that cited scrm R package
View scrm citation profile
Other R packages that scrm depends, imports, suggests or enhances
Complete documentation for scrm
Functions, R codes and Examples using the scrm R package
Some associated functions: scrm-package . scrm . 
Some associated R codes: RcppExports.R . scrm.R .  Full scrm package functions and examples
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