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scoper
View on CRAN: Click
here
Download and install scoper package within the R console
Install from CRAN:
install.packages("scoper")
Install from Github:
library("remotes")
install_github("cran/scoper")
Install by package version:
library("remotes")
install_version("scoper", "1.3.0")
Attach the package and use:
library("scoper")
Maintained by
Susanna Marquez
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.scoper . https://bitbucket.org/kleinstein/scoper/issues . https://scoper.readthedocs.io . scoper citation info . scoper results . scoper.pdf . scoper_1.3.0.tar.gz . scoper_1.3.0.zip . scoper_1.3.0.zip . scoper_1.3.0.zip . scoper_1.3.0.tgz . scoper_1.3.0.tgz . scoper_1.3.0.tgz . scoper_1.3.0.tgz . scoper_1.3.0.tgz . scoper_1.3.0.tgz . scoper archive . https://CRAN.R-project.org/package=scoper .
First Published: 2018-10-14
Latest Update: 2022-09-22
Description:
Provides a computational framework for identification of B cell clones from
Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data. Three main
functions are included (identicalClones, hierarchicalClones, and spectralClones)
that perform clustering among sequences of BCRs/IGs (B cell receptors/immunoglobulins)
which share the same V gene, J gene and junction length.
Nouri N and Kleinstein SH (2018) .
Nouri N and Kleinstein SH (2019) .
Gupta NT, et al. (2017) .
How to cite:
Susanna Marquez (2018). scoper: Spectral Clustering-Based Method for Identifying B Cell Clones. R package version 1.3.0, https://cran.r-project.org/web/packages/scoper. Accessed 29 Mar. 2025.
Previous versions and publish date:
Other packages that cited scoper R package
View scoper citation profile
Other R packages that scoper depends,
imports, suggests or enhances
Complete documentation for scoper
Functions, R codes and Examples using
the scoper R package
Some associated functions: ExampleDb . ScoperClones-class . hierarchicalClones . identicalClones . plotCloneSummary . scoper-package . scoper . spectralClones .
Some associated R codes: Data.R . Functions.R . RcppExports.R . Scoper.R . Full scoper package functions and examples
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