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scoper  

Spectral Clustering-Based Method for Identifying B Cell Clones
View on CRAN: Click here


Download and install scoper package within the R console
Install from CRAN:
install.packages("scoper")

Install from Github:
library("remotes")
install_github("cran/scoper")

Install by package version:
library("remotes")
install_version("scoper", "1.3.0")



Attach the package and use:
library("scoper")
Maintained by
Susanna Marquez
[Scholar Profile | Author Map]
First Published: 2018-10-14
Latest Update: 2022-09-22
Description:
Provides a computational framework for identification of B cell clones from Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data. Three main functions are included (identicalClones, hierarchicalClones, and spectralClones) that perform clustering among sequences of BCRs/IGs (B cell receptors/immunoglobulins) which share the same V gene, J gene and junction length. Nouri N and Kleinstein SH (2018) . Nouri N and Kleinstein SH (2019) . Gupta NT, et al. (2017) .
How to cite:
Susanna Marquez (2018). scoper: Spectral Clustering-Based Method for Identifying B Cell Clones. R package version 1.3.0, https://cran.r-project.org/web/packages/scoper. Accessed 19 Apr. 2025.
Previous versions and publish date:
0.1.0 (2018-10-14 19:00), 0.2.0 (2019-08-05 23:50), 1.0.0 (2020-05-17 00:20), 1.0.1 (2020-05-25 21:40), 1.1.0 (2020-08-10 23:50), 1.2.0 (2021-11-02 22:30), 1.2.1 (2022-09-22 19:00)
Other packages that cited scoper R package
View scoper citation profile
Other R packages that scoper depends, imports, suggests or enhances
Complete documentation for scoper
Functions, R codes and Examples using the scoper R package
Some associated functions: ExampleDb . ScoperClones-class . hierarchicalClones . identicalClones . plotCloneSummary . scoper-package . scoper . spectralClones . 
Some associated R codes: Data.R . Functions.R . RcppExports.R . Scoper.R .  Full scoper package functions and examples
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