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scistreer  

Maximum-Likelihood Perfect Phylogeny Inference at Scale
View on CRAN: Click here


Download and install scistreer package within the R console
Install from CRAN:
install.packages("scistreer")

Install from Github:
library("remotes")
install_github("cran/scistreer")

Install by package version:
library("remotes")
install_version("scistreer", "1.2.0")



Attach the package and use:
library("scistreer")
Maintained by
Teng Gao
[Scholar Profile | Author Map]
First Published: 2022-11-21
Latest Update: 2023-06-15
Description:
Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) . 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells).
How to cite:
Teng Gao (2022). scistreer: Maximum-Likelihood Perfect Phylogeny Inference at Scale. R package version 1.2.0, https://cran.r-project.org/web/packages/scistreer. Accessed 29 Mar. 2025.
Previous versions and publish date:
1.0.0 (2022-11-21 11:50), 1.0.1 (2022-11-25 02:20), 1.1.0 (2023-01-06 23:30)
Other packages that cited scistreer R package
View scistreer citation profile
Other R packages that scistreer depends, imports, suggests or enhances
Complete documentation for scistreer
Functions, R codes and Examples using the scistreer R package
Some associated functions: P_example . P_small . annotate_tree . get_mut_graph . gtree_small . label_edges . ladderize . mut_nodes_small . mut_to_tree . perform_nni . plot_phylo_heatmap . run_scistree . score_tree . to_phylo . transfer_links . tree_small . tree_upgma . 
Some associated R codes: RcppExports.R . data.R . scistreer.R . vars.R . vis.R . zzz.R .  Full scistreer package functions and examples
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