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scfetch  

Access and Format Single-Cell RNA-Seq Datasets from Public Resources
View on CRAN: Click here


Download and install scfetch package within the R console
Install from CRAN:
install.packages("scfetch")

Install from Github:
library("remotes")
install_github("cran/scfetch")

Install by package version:
library("remotes")
install_version("scfetch", "0.5.0")



Attach the package and use:
library("scfetch")
Maintained by
Yabing Song
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-11-21
Latest Update:
Description:
The goal of 'scfetch' is to access and format single-cell RNA-seq datasets. It can be used to download single-cell RNA-seq datasets from widely used public resources, including GEO , Zenodo , CELLxGENE , Human Cell Atlas , PanglaoDB and UCSC Cell Browser . And, it can also be used to perform object conversion between SeuratObject , loom , h5ad , SingleCellExperiment , CellDataSet and cell_data_set .
How to cite:
Yabing Song (2023). scfetch: Access and Format Single-Cell RNA-Seq Datasets from Public Resources. R package version 0.5.0, https://cran.r-project.org/web/packages/scfetch. Accessed 21 Sep. 2026.
Previous versions and publish date:
(2026-07-09 07:01), 0.5.0 (2023-11-21 19:20)
Other packages that cited scfetch R package
View scfetch citation profile
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