Other packages > Find by keyword >

scfetch  

Access and Format Single-Cell RNA-Seq Datasets from Public Resources
View on CRAN: Click here


Download and install scfetch package within the R console
Install from CRAN:
install.packages("scfetch")

Install from Github:
library("remotes")
install_github("cran/scfetch")

Install by package version:
library("remotes")
install_version("scfetch", "0.5.0")



Attach the package and use:
library("scfetch")
Maintained by
Yabing Song
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-11-21
Latest Update:
Description:
The goal of 'scfetch' is to access and format single-cell RNA-seq datasets. It can be used to download single-cell RNA-seq datasets from widely used public resources, including GEO , Zenodo , CELLxGENE , Human Cell Atlas , PanglaoDB and UCSC Cell Browser . And, it can also be used to perform object conversion between SeuratObject , loom , h5ad , SingleCellExperiment , CellDataSet and cell_data_set .
How to cite:
Yabing Song (2023). scfetch: Access and Format Single-Cell RNA-Seq Datasets from Public Resources. R package version 0.5.0, https://cran.r-project.org/web/packages/scfetch. Accessed 21 Jul. 2026.
Previous versions and publish date:
(2026-07-09 07:01), 0.5.0 (2023-11-21 19:20)
Other packages that cited scfetch R package
View scfetch citation profile
Other R packages that scfetch depends, imports, suggests or enhances
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

netgen  
Network Generator for Combinatorial Graph Problems
Methods for the generation of a wide range of network geographies, e.g., grid networks or clustered ...
Download / Learn more Package Citations See dependency  
splash  
Simple Process-Led Algorithms for Simulating Habitats
This program calculates bioclimatic indices and fluxes (radiation, evapotranspiration, soil moistur ...
Download / Learn more Package Citations See dependency  
OSTE  
Optimal Survival Trees Ensemble
Function for growing survival trees ensemble ('Naz Gul', 'Nosheen Faiz', 'Dan Brawn', 'Rafal Kulakow ...
Download / Learn more Package Citations See dependency  
truncnormbayes  
Estimates Moments for a Truncated Normal Distribution using 'Stan'
Finds the posterior modes for the mean and standard deviation for a truncated normal distribution wi ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
beastier  
Call 'BEAST2'
'BEAST2' () is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/ ...
Download / Learn more Package Citations See dependency  

27,889

R Packages

239,283

Dependencies

74,019

Author Associations

27,890

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA