Other packages > Find by keyword >

scellpam  

Applying Partitioning Around Medoids to Single Cell Data with High Number of Cells
View on CRAN: Click here


Download and install scellpam package within the R console
Install from CRAN:
install.packages("scellpam")

Install from Github:
library("remotes")
install_github("cran/scellpam")

Install by package version:
library("remotes")
install_version("scellpam", "1.4.6.2")



Attach the package and use:
library("scellpam")
Maintained by
Juan Domingo
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-11-28
Latest Update: 2024-07-18
Description:
PAM (Partitioning Around Medoids) algorithm application to samples of single cell sequencing techniques with a high number of cells (as many as the computer memory allows). The package uses a binary format to store matrices (either full, sparse or symmetric) in files written in the disk that can contain any data type (not just double) which allows its manipulation when memory is sufficient to load them as int or float, but not as double. The PAM implementation is done in parallel, using several/all the cores of the machine, if it has them. This package shares a great part of its code with packages 'jmatrix' and 'parallelpam' but their functionality is included here so there is no need to install them.
How to cite:
Juan Domingo (2022). scellpam: Applying Partitioning Around Medoids to Single Cell Data with High Number of Cells. R package version 1.4.6.2, https://cran.r-project.org/web/packages/scellpam. Accessed 06 Mar. 2026.
Previous versions and publish date:
1.4.1 (2023-01-09 09:10), 1.4.4 (2023-06-24 20:30), 1.4.5 (2023-10-13 13:10), 1.4.6.1 (2024-07-03 14:30), 1.4 (2022-11-28 11:10)
Other packages that cited scellpam R package
View scellpam citation profile
Other R packages that scellpam depends, imports, suggests or enhances
Complete documentation for scellpam
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
openxlsx  
Read, Write and Edit xlsx Files
Simplifies the creation of Excel .xlsx files by providing a high level interface to writing, stylin ...
Download / Learn more Package Citations See dependency  
mlr3viz  
Visualizations for 'mlr3'
Visualization package of the 'mlr3' ecosystem. It features plots for mlr3 objects such as tasks, le ...
Download / Learn more Package Citations See dependency  
lbfgs  
Limited-memory BFGS Optimization
A wrapper built around the libLBFGS optimization library by Naoaki Okazaki. The lbfgs package implem ...
Download / Learn more Package Citations See dependency  
solitude  
An Implementation of Isolation Forest
Isolation forest is anomaly detection method introduced by the paper Isolation based Anomaly Detecti ...
Download / Learn more Package Citations See dependency  
EMVS  
The Expectation-Maximization Approach to Bayesian Variable Selection
An efficient expectation-maximization algorithm for fitting Bayesian spike-and-slab regularization p ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,244

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA