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scaRabee  

Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models
View on CRAN: Click here


Download and install scaRabee package within the R console
Install from CRAN:
install.packages("scaRabee")

Install from Github:
library("remotes")
install_github("cran/scaRabee")

Install by package version:
library("remotes")
install_version("scaRabee", "1.1-4")



Attach the package and use:
library("scaRabee")
Maintained by
Sebastien Bihorel
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2010-05-05
Latest Update: 2022-02-04
Description:
A port of the Scarabee toolkit originally written as a Matlab-based application. scaRabee provides a framework for simulation and optimization of pharmacokinetic-pharmacodynamic models at the individual and population level. It is built on top of the neldermead package, which provides the direct search algorithm proposed by Nelder and Mead for model optimization.
How to cite:
Sebastien Bihorel (2010). scaRabee: Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models. R package version 1.1-4, https://cran.r-project.org/web/packages/scaRabee. Accessed 25 Jun. 2026.
Previous versions and publish date:
1.0-1 (2010-05-12 09:22), 1.0-2 (2010-05-26 10:15), 1.0 (2010-05-05 10:09), 1.1-0 (2011-04-01 08:27), 1.1-1 (2011-04-13 11:26), 1.1-2 (2011-12-11 11:41), 1.1-3 (2014-08-22 08:26), 1.1-4 (2022-02-04 14:00)
Other packages that cited scaRabee R package
View scaRabee citation profile
Other R packages that scaRabee depends, imports, suggests or enhances
Complete documentation for scaRabee
Functions, R codes and Examples using the scaRabee R package
Some associated functions: bound.parameters . compute.secondary . convert.infusion . dde.model . dde.utils . estimation.plot . examples.data . explicit.model . finalize.grid.report . finalize.report . fitmle.cov . fitmle . get.cov.matrix . get.events . get.layout . get.parms.data . get.secondary . initialize.report . ode.model . ode.utils . order.parms.list . pder . problem.eval . residual.report . scaRabee-package . scarabee.analysis . scarabee.check.model . scarabee.check.reserved . scarabee.clean . scarabee.directory . scarabee.gridsearch . scarabee.new . scarabee.read.data . scarabee.read.model . scarabee.read.parms . simulation.plot . simulation.report . weighting . 
Some associated R codes: bound.parameters.R . compute.secondary.R . convert.infusion.R . create.intervals.R . dde.lags.R . dde.model.R . dde.syst.R . de.output.R . derived.parms.R . estimation.plot.R . explicit.model.R . finalize.grid.report.R . finalize.report.R . fitmle.R . fitmle.cov.R . get.cov.matrix.R . get.events.R . get.layout.R . get.parms.data.R . get.secondary.R . init.cond.R . init.update.R . initialize.report.R . input.scaling.R . make.dosing.R . ode.model.R . ode.syst.R . order.parms.list.R . pder.R . problem.eval.R . residual.report.R . scarabee.analysis.R . scarabee.check.model.R . scarabee.check.reserved.R . scarabee.clean.R . scarabee.directory.R . scarabee.gridsearch.R . scarabee.new.R . scarabee.read.data.R . scarabee.read.model.R . scarabee.read.parms.R . simulation.plot.R . simulation.report.R . weighting.R .  Full scaRabee package functions and examples
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