Other packages > Find by keyword >

scTenifoldNet  

Construct and Compare scGRN from Single-Cell Transcriptomic Data
View on CRAN: Click here


Download and install scTenifoldNet package within the R console
Install from CRAN:
install.packages("scTenifoldNet")

Install from Github:
library("remotes")
install_github("cran/scTenifoldNet")

Install by package version:
library("remotes")
install_version("scTenifoldNet", "1.3")



Attach the package and use:
library("scTenifoldNet")
Maintained by
Daniel Osorio
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-12-15
Latest Update: 2021-10-29
Description:
A workflow based on machine learning methods to construct and compare single-cell gene regulatory networks (scGRN) using single-cell RNA-seq (scRNA-seq) data collected from different conditions. Uses principal component regression, tensor decomposition, and manifold alignment, to accurately identify even subtly shifted gene expression programs. See for more details.
How to cite:
Daniel Osorio (2019). scTenifoldNet: Construct and Compare scGRN from Single-Cell Transcriptomic Data. R package version 1.3, https://cran.r-project.org/web/packages/scTenifoldNet. Accessed 15 Jul. 2026.
Previous versions and publish date:
(2026-07-09 07:01), 1.0.0 (2019-12-15 15:30), 1.1.0 (2020-01-08 20:50), 1.2.0 (2020-03-10 19:00), 1.2.1 (2020-04-09 11:10), 1.2.2 (2020-05-13 22:40), 1.2.3 (2020-08-26 00:20), 1.2.4 (2020-11-17 09:20)
Other packages that cited scTenifoldNet R package
View scTenifoldNet citation profile
Other R packages that scTenifoldNet depends, imports, suggests or enhances
Complete documentation for scTenifoldNet
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

gscaLCA  
Generalized Structure Component Analysis- Latent Class Analysis & Latent Class Regression
Execute Latent Class Analysis (LCA) and Latent Class Regression (LCR) by using Generalized Structu ...
Download / Learn more Package Citations See dependency  
SECFISH  
Disaggregate Variable Costs
These functions were developed within SECFISH project (Strengthening regional cooperation in the are ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
footBayes  
Fitting Bayesian and MLE Football Models
This is the first package allowing for the estimation, visualization and prediction of the most wel ...
Download / Learn more Package Citations See dependency  
gamlss.add  
Extra Additive Terms for Generalized Additive Models for Location Scale and Shape
Interface for extra smooth functions including tensor products, neural networks and decision trees. ...
Download / Learn more Package Citations See dependency  
PermAlgo  
Permutational Algorithm to Simulate Survival Data
This version of the permutational algorithm generates a dataset in which event and censoring times ...
Download / Learn more Package Citations See dependency  

27,806

R Packages

239,283

Dependencies

73,837

Author Associations

27,807

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA