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scTEP
View on CRAN: Click
here
Download and install scTEP package within the R console
Install from CRAN:
install.packages("scTEP")
Install from Github:
library("remotes")
install_github("cran/scTEP")
Install by package version:
library("remotes")
install_version("scTEP", "0.1.0")
Attach the package and use:
library("scTEP")
Maintained by
Yifan Zhang
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-09-26
Latest Update: 2023-03-11
Description:
A single-cell trajectory inference method using Autoencoder and Minimum Spanning Tree MST from high dimensional scRNA-Seq data. The software run clustering methods six times using scDHA with the number of clusters set from 6 to 10. Then the scTEP calculates pseudotime based on multiple clustering results. Lastly the scTEP generates trajectory using MST algorithm and fine-tunes it according to the pseudotime of clusters.
How to cite:
Yifan Zhang (2022). scTEP: Single-Cell Trajectory Inference using Ensemble Pseudotimes. R package version 0.1.0, https://cran.r-project.org/web/packages/scTEP
Previous versions and publish date:
0.1.0 (2022-09-26 15:10)
Other packages that cited scTEP R package
View scTEP citation profile
Other R packages that scTEP depends,
imports, suggests or enhances
Functions, R codes and Examples using
the scTEP R package
Some associated functions: clustering . genesets . goolam . preprocessing . scTEP.fa . trajectoryinference .
Some associated R codes: clustering.R . trajectory_inference.R . utils.R . Full scTEP package functions and examples
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