Other packages > Find by keyword >

scTEP  

Single-Cell Trajectory Inference using Ensemble Pseudotimes
View on CRAN: Click here


Download and install scTEP package within the R console
Install from CRAN:
install.packages("scTEP")

Install from Github:
library("remotes")
install_github("cran/scTEP")

Install by package version:
library("remotes")
install_version("scTEP", "0.1.0")



Attach the package and use:
library("scTEP")
Maintained by
Yifan Zhang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-09-26
Latest Update:
Description:
A single-cell trajectory inference method using Autoencoder and Minimum Spanning Tree MST from high dimensional scRNA-Seq data. The software run clustering methods six times using scDHA with the number of clusters set from 6 to 10. Then the scTEP calculates pseudotime based on multiple clustering results. Lastly the scTEP generates trajectory using MST algorithm and fine-tunes it according to the pseudotime of clusters.
How to cite:
Yifan Zhang (2022). scTEP: Single-Cell Trajectory Inference using Ensemble Pseudotimes. R package version 0.1.0, https://cran.r-project.org/web/packages/scTEP. Accessed 28 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:01), 0.1.0 (2022-09-26 15:10)
Other packages that cited scTEP R package
View scTEP citation profile
Other R packages that scTEP depends, imports, suggests or enhances
Functions, R codes and Examples using the scTEP R package
Some associated functions: clustering . genesets . goolam . preprocessing . scTEP.fa . trajectoryinference . 
Some associated R codes: clustering.R . trajectory_inference.R . utils.R .  Full scTEP package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

ncdf4  
Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files
Provides a high-level R interface to data files written using Unidata's netCDF library (version 4 or ...
Download / Learn more Package Citations See dependency  
cats  
Cohort Platform Trial Simulation
Cohort plAtform Trial Simulation whereby every cohort consists of two arms, control and experimenta ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
NPHazardRate  
Nonparametric Hazard Rate Estimation
Provides functions and examples for histogram, kernel (classical, variable bandwidth and transformat ...
Download / Learn more Package Citations See dependency  
msamp  
Estimate Sample Size to Detect Bacterial Contamination in a Product Lot
Estimates the sample size needed to detect microbial contamination in a lot with a user-specified d ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA