Other packages > Find by keyword >

scSorter  

Implementation of 'scSorter' Algorithm
View on CRAN: Click here


Download and install scSorter package within the R console
Install from CRAN:
install.packages("scSorter")

Install from Github:
library("remotes")
install_github("cran/scSorter")

Install by package version:
library("remotes")
install_version("scSorter", "0.0.2")



Attach the package and use:
library("scSorter")
Maintained by
Jun Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-09-01
Latest Update: 2021-03-17
Description:
Implements the algorithm described in Guo, H., and Li, J., "scSorter: assigning cells to known cell types according to known marker genes". Cluster cells to known cell types based on marker genes specified for each cell type.
How to cite:
Jun Li (2020). scSorter: Implementation of 'scSorter' Algorithm. R package version 0.0.2, https://cran.r-project.org/web/packages/scSorter. Accessed 07 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:01), 0.0.1 (2020-09-01 16:20), 0.0.2 (2021-03-17 07:40)
Other packages that cited scSorter R package
View scSorter citation profile
Other R packages that scSorter depends, imports, suggests or enhances
Complete documentation for scSorter
Functions, R codes and Examples using the scSorter R package
Some associated functions: cost_func . data_preprocess . design_matrix_builder . scSorter . update_C . update_func . update_mu . xfindvariable_genes . xnormalize_scData . 
Some associated R codes: cost_calc.R . data_preprocess.R . design_matrix_builder.R . scSorter.R . update_C.R . update_func.R . update_mu.R . utilities_temp.R .  Full scSorter package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

modelwordcloud  
Model Word Clouds
Makes a word cloud of text, sized by the frequency of the word, and colored either by user-specified ...
Download / Learn more Package Citations See dependency  
BayesESS  
Determining Effective Sample Size
Determines effective sample size of a parametric prior distribution in Bayesian models. For a web-b ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
enrichwith  
Methods to Enrich R Objects with Extra Components
Provides the "enrich" method to enrich list-like R objects with new, relevant components. The curren ...
Download / Learn more Package Citations See dependency  
bbricks  
Bayesian Methods and Graphical Model Structures for Statistical Modeling
A set of frequently used Bayesian parametric and nonparametric model structures, as well as a set of ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA