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scSorter  

Implementation of 'scSorter' Algorithm
View on CRAN: Click here


Download and install scSorter package within the R console
Install from CRAN:
install.packages("scSorter")

Install from Github:
library("remotes")
install_github("cran/scSorter")

Install by package version:
library("remotes")
install_version("scSorter", "0.0.2")



Attach the package and use:
library("scSorter")
Maintained by
Jun Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-09-01
Latest Update: 2021-03-17
Description:
Implements the algorithm described in Guo, H., and Li, J., "scSorter: assigning cells to known cell types according to known marker genes". Cluster cells to known cell types based on marker genes specified for each cell type.
How to cite:
Jun Li (2020). scSorter: Implementation of 'scSorter' Algorithm. R package version 0.0.2, https://cran.r-project.org/web/packages/scSorter
Previous versions and publish date:
0.0.1 (2020-09-01 16:20)
Other packages that cited scSorter R package
View scSorter citation profile
Other R packages that scSorter depends, imports, suggests or enhances
Functions, R codes and Examples using the scSorter R package
Some associated functions: cost_func . data_preprocess . design_matrix_builder . scSorter . update_C . update_func . update_mu . xfindvariable_genes . xnormalize_scData . 
Some associated R codes: cost_calc.R . data_preprocess.R . design_matrix_builder.R . scSorter.R . update_C.R . update_func.R . update_mu.R . utilities_temp.R .  Full scSorter package functions and examples
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