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scPOP  

Metrics for Benchmarking scRNA-Seq Batch Correction
View on CRAN: Click here


Download and install scPOP package within the R console
Install from CRAN:
install.packages("scPOP")

Install from Github:
library("remotes")
install_github("cran/scPOP")

Install by package version:
library("remotes")
install_version("scPOP", "0.1.0")



Attach the package and use:
library("scPOP")
Maintained by
Vinay Swamy
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-08-04
Latest Update: 2022-12-05
Description:
Evaluate batch effect correction algorithms for scRNA-seq using multiple established methods including the Adjusted Rand IndexNormalized Mutual Information Local Inverse Simpson Index and Silhouette Width. Methods for aggregating and weighing multiple metricstogether are also included. For further explanation of methods see Swamy et al. 2021doi10.11012021.03.26.437190 .
How to cite:
Vinay Swamy (2021). scPOP: Metrics for Benchmarking scRNA-Seq Batch Correction. R package version 0.1.0, https://cran.r-project.org/web/packages/scPOP. Accessed 28 Mar. 2025.
Previous versions and publish date:
0.1.0 (2021-08-04 17:10)
Other packages that cited scPOP R package
View scPOP citation profile
Other R packages that scPOP depends, imports, suggests or enhances
Functions, R codes and Examples using the scPOP R package
Full scPOP package functions and examples
Downloads during the last 30 days
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