R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
scCustomize
View on CRAN: Click
here
Download and install scCustomize package within the R console
Install from CRAN:
install.packages("scCustomize")
Install from Github:
library("remotes")
install_github("cran/scCustomize")
Install by package version:
library("remotes")
install_version("scCustomize", "3.0.1")
Attach the package and use:
library("scCustomize")
Maintained by
Samuel Marsh
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.scCustomize . https://github.com/samuel-marsh/scCustomize/issues . https://github.com/samuel-marsh/scCustomize . https://samuel-marsh.github.io/scCustomize/ . scCustomize results . scCustomize.pdf . scCustomize_3.0.1.tar.gz . scCustomize_3.0.1.zip . scCustomize_3.0.1.zip . scCustomize_3.0.1.zip . scCustomize_3.0.1.tgz . scCustomize_3.0.1.tgz . scCustomize_3.0.1.tgz . scCustomize_3.0.1.tgz . scCustomize_3.0.1.tgz . scCustomize_3.0.1.tgz . scCustomize archive . https://CRAN.R-project.org/package=scCustomize .
First Published: 2022-12-23
Latest Update: 2024-02-28
Description:
Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" RRID:SCR_024675.
How to cite:
Samuel Marsh (2022). scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing. R package version 3.0.1, https://cran.r-project.org/web/packages/scCustomize. Accessed 29 Mar. 2025.
Previous versions and publish date:
Other packages that cited scCustomize R package
View scCustomize citation profile
Other R packages that scCustomize depends,
imports, suggests or enhances
Complete documentation for scCustomize
Functions, R codes and Examples using
the scCustomize R package
Some associated functions: Add_CellBender_Diff . Add_Cell_Complexity_LIGER . Add_Cell_Complexity_Seurat . Add_Cell_QC_Metrics . Add_Mito_Ribo_LIGER . Add_Mito_Ribo_Seurat . Add_Pct_Diff . Add_Sample_Meta . Add_Top_Gene_Pct_Seurat . Barcode_Plot . Blank_Theme . Case_Check . CellBender_Diff_Plot . CellBender_Feature_Diff . Cell_Highlight_Plot . Change_Delim_All . Change_Delim_Prefix . Change_Delim_Suffix . CheckMatrix_scCustom . Cluster_Highlight_Plot . Cluster_Stats_All_Samples . Clustered_DotPlot . ColorBlind_Pal . Copy_From_GCP . Copy_To_GCP . Create_10X_H5 . Create_CellBender_Merged_Seurat . Create_Cluster_Annotation_File . Dark2_Pal . DimPlot_All_Samples . DimPlot_LIGER . DimPlot_scCustom . DiscretePalette_scCustomize . DotPlot_scCustom . Extract_Modality . Extract_Sample_Meta . Extract_Top_Markers . FeaturePlot_DualAssay . FeaturePlot_scCustom . FeatureScatter_scCustom . Fetch_Meta . Gene_Present . Hue_Pal . Iterate_Barcode_Rank_Plot . Iterate_Cluster_Highlight_Plot . Iterate_DimPlot_bySample . Iterate_FeaturePlot_scCustom . Iterate_Meta_Highlight_Plot . Iterate_PC_Loading_Plots . Iterate_Plot_Density_Custom . Iterate_Plot_Density_Joint . Iterate_VlnPlot_scCustom . JCO_Four . Liger_to_Seurat . MAD_Stats . Median_Stats . Merge_Seurat_List . Merge_Sparse_Data_All . Merge_Sparse_Multimodal_All . Meta_Highlight_Plot . Meta_Numeric . Meta_Present . Meta_Present_LIGER . Meta_Remove_Seurat . Move_Legend . NavyAndOrange . PC_Plotting . PalettePlot . Percent_Expressing . Plot_Cells_per_Sample . Plot_Density_Custom . Plot_Density_Joint_Only . Plot_Median_Genes . Plot_Median_Mito . Plot_Median_Other . Plot_Median_UMIs . Pull_Cluster_Annotation . Pull_Directory_List . QC_Histogram . QC_Plot_GenevsFeature . QC_Plot_UMIvsFeature . QC_Plot_UMIvsGene . QC_Plots_Combined_Vln . QC_Plots_Complexity . QC_Plots_Feature . QC_Plots_Genes . QC_Plots_Mito . QC_Plots_UMIs . Read10X_GEO . Read10X_Multi_Directory . Read10X_h5_GEO . Read10X_h5_Multi_Directory . Read_CellBender_h5_Mat . Read_CellBender_h5_Multi_Directory . Read_CellBender_h5_Multi_File . Read_GEO_Delim . Read_Metrics_10X . Reduction_Loading_Present . Rename_Clusters . Replace_Suffix . Seq_QC_Plot_Alignment_Combined . Seq_QC_Plot_Antisense . Seq_QC_Plot_Basic_Combined . Seq_QC_Plot_Exonic . Seq_QC_Plot_Genes . Seq_QC_Plot_Genome . Seq_QC_Plot_Intergenic . Seq_QC_Plot_Intronic . Seq_QC_Plot_Number_Cells . Seq_QC_Plot_Reads_in_Cells . Seq_QC_Plot_Reads_per_Cell . Seq_QC_Plot_Saturation . Seq_QC_Plot_Total_Genes . Seq_QC_Plot_Transcriptome . Seq_QC_Plot_UMIs . Setup_scRNAseq_Project . Single_Color_Palette . Split_FeatureScatter . Stacked_VlnPlot . Store_Misc_Info_Seurat . Store_Palette_Seurat . Top_Genes_Factor . UnRotate_X . VariableFeaturePlot_scCustom . Variable_Features_ALL_LIGER . VlnPlot_scCustom . ensembl_mito_id . ensembl_ribo_id . ieg_gene_list . msigdb_qc_gene_list . plotFactors_scCustom . scCustomize-package . scCustomize_Palette . theme_ggprism_mod . viridis_shortcut .
Some associated R codes: Color_Palettes.R . Data.R . Internal_Utilities.R . LIGER_Plotting.R . LIGER_Utilities.R . Nebulosa_Plotting.R . Object_Utilities.R . Plotting_Utilities.R . QC_Plotting_Seq_10X.R . QC_Plotting_Seurat.R . Read_&_Write_Data.R . Seurat_Iterative_Plotting.R . Seurat_Plotting.R . Statistics.R . Statistics_Plotting.R . Utilities.R . zzz.R . Full scCustomize package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
gglgbtq
Provides multiple palettes based on pride flags with tailored themes. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Laura Bakala (view profile)
landmix
Non-parametric prediction of survival outcomes for mixture data that incorporates covariates and a l ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Layla Parast (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
23,842
R Packages
207,311
Dependencies
64,420
Author Associations
23,781
Publication Badges
