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santaR
View on CRAN: Click
here
Download and install santaR package within the R console
Install from CRAN:
install.packages("santaR")
Install from Github:
library("remotes")
install_github("cran/santaR")
Install by package version:
library("remotes")
install_version("santaR", "1.2.4")
Attach the package and use:
library("santaR")
Maintained by
Arnaud Wolfer
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-01-24
Latest Update: 2022-05-23
Description:
A graphical and automated pipeline for the analysis
of short time-series in R ('santaR'). This approach is designed to accommodate asynchronous
time sampling (i.e. different time points for different individuals),
inter-individual variability, noisy measurements and large numbers of variables.
Based on a smoothing splines functional model, 'santaR' is able to detect variables
highlighting significantly different temporal trajectories between study groups.
Designed initially for metabolic phenotyping, 'santaR' is also suited for other Systems Biology
disciplines. Command line and graphical analysis (via a 'shiny' application) enable fast and
parallel automated analysis and reporting, intuitive visualisation and comprehensive plotting
options for non-specialist users.
How to cite:
Arnaud Wolfer (2018). santaR: Short Asynchronous Time-Series Analysis. R package version 1.2.4, https://cran.r-project.org/web/packages/santaR
Previous versions and publish date:
Other packages that cited santaR R package
View santaR citation profile
Other R packages that santaR depends,
imports, suggests or enhances
Functions, R codes and Examples using
the santaR R package
Some associated functions: AIC_smooth_spline . AICc_smooth_spline . BIC_smooth_spline . acuteInflammation . get_eigen_DF . get_eigen_DFoverlay_list . get_eigen_spline . get_eigen_spline_matrix . get_grouping . get_ind_time_matrix . get_param_evolution . loglik_smooth_spline . plot_nbTP_histogram . plot_param_evolution . santaR . santaR_CBand . santaR_auto_fit . santaR_auto_summary . santaR_fit . santaR_plot . santaR_pvalue_dist . santaR_pvalue_dist_within . santaR_pvalue_fit . santaR_pvalue_fit_within . santaR_start_GUI . scaling_UV . scaling_mean .
Some associated R codes: data.R . df_search.R . santaR.R . santaR_CBand.R . santaR_auto_fit.R . santaR_auto_summary.R . santaR_fit.R . santaR_plot.R . santaR_pvalue_dist.R . santaR_pvalue_fit.R . santaR_start_GUI.R . utils.R . zzz.R . Full santaR package functions and examples
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