Other packages > Find by keyword >

saemix  

Stochastic Approximation Expectation Maximization (SAEM) Algorithm
View on CRAN: Click here


Download and install saemix package within the R console
Install from CRAN:
install.packages("saemix")

Install from Github:
library("remotes")
install_github("cran/saemix")

Install by package version:
library("remotes")
install_version("saemix", "3.3")



Attach the package and use:
library("saemix")
Maintained by
Emmanuelle Comets
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2011-06-30
Latest Update: 2023-06-27
Description:
The 'saemix' package implements the Stochastic Approximation EM algorithm for parameter estimation in (non)linear mixed effects models. The SAEM algorithm (i) computes the maximum likelihood estimator of the population parameters, without any approximation of the model (linearisation, quadrature approximation,...), using the Stochastic Approximation Expectation Maximization (SAEM) algorithm, (ii) provides standard errors for the maximum likelihood estimator (iii) estimates the conditional modes, the conditional means and the conditional standard deviations of the individual parameters, using the Hastings-Metropolis algorithm (see Comets et al. (2017) ). Many applications of SAEM in agronomy, animal breeding and PKPD analysis have been published by members of the Monolix group. The full PDF documentation for the package including references about the algorithm and examples can be downloaded on the github of the IAME research institute for 'saemix': .
How to cite:
Emmanuelle Comets (2011). saemix: Stochastic Approximation Expectation Maximization (SAEM) Algorithm. R package version 3.3, https://cran.r-project.org/web/packages/saemix. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.95 (2011-06-30 19:04), 0.96.1 (2013-03-01 18:11), 0.96 (2011-07-02 14:22), 1.2 (2014-02-25 17:11), 2.1 (2017-08-24 13:55), 2.2 (2018-10-10 18:00), 2.3 (2019-12-06 18:10), 2.4 (2021-02-24 00:00), 3.0 (2022-02-08 16:30), 3.1 (2022-08-05 17:00), 3.2 (2023-06-27 12:10)
Other packages that cited saemix R package
View saemix citation profile
Other R packages that saemix depends, imports, suggests or enhances
Complete documentation for saemix
Functions, R codes and Examples using the saemix R package
Some associated functions: PD1.saemix . SaemixData-class . SaemixModel-class . SaemixObject-class . SaemixRes-class . backward.procedure . boostrap.data . coef.saemix . compare.saemix . conddist.saemix . cow.saemix . createSaemixObject . default.saemix.plots . discreteVPC . discreteVPCTTE . epilepsy.saemix . extract-methods . fim.saemix . fitted.saemix . forward.procedure . initialize-methods . knee.saemix . llgq.saemix . llis.saemix . logLik . lung.saemix . map.saemix . mydiag . npdeSaemix . oxboys.saemix . plot-SaemixData . plot-SaemixModel-SaemixData-method . plot-SaemixModel . plot-SaemixObject-ANY-method . plot-methods . plotDiscreteData . predict-methods . predict.SaemixModel . print-methods . psi-methods . rapi.saemix . read-methods . readSaemix-methods . replaceData . resid.saemix . saemix.bootstrap . saemix.internal . saemix . saemix.plot.data . saemix.plot.select . saemix.plot.setoptions . saemix.predict . saemixControl . saemixData . saemixModel . saemixPredictNewdata . show-methods . showall-methods . simulate.SaemixObject . simulateDiscreteSaemix . step.saemix . stepwise.procedure . sub-SaemixModel-method . sub-SaemixObject-method . sub-SaemixRes-method . subset . summary-methods . testnpde . theo.saemix . toenail.saemix . transform . transformCatCov . transformContCov . validate.covariance.model . validate.names . vcov . xbinning . yield.saemix . 
Some associated R codes: SaemixData.R . SaemixModel.R . SaemixObject.R . SaemixRes.R . aaa_generics.R . backward.R . compute_LL.R . forward.R . func_FIM.R . func_aux.R . func_bootstrap.R . func_compare.R . func_discreteVPC.R . func_distcond.R . func_estimParam.R . func_exploreData.R . func_npde.R . func_plots.R . func_simulations.R . func_stepwise.R . main.R . main_estep.R . main_initialiseMainAlgo.R . main_mstep.R . stepwise.R . zzz.R .  Full saemix package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

wordspace  
Distributional Semantic Models in R
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency  
dmlalg  
Double Machine Learning Algorithms
Implementation of double machine learning (DML) algorithms in R, based on Emmenegger and Buehlmann ...
Download / Learn more Package Citations See dependency  
Rfast2  
A Collection of Efficient and Extremely Fast R Functions II
A collection of fast statistical and utility functions for data analysis. Functions for regression, ...
Download / Learn more Package Citations See dependency  
tropAlgebra  
Tropical Algebraic Functions
It includes functions like tropical addition, tropical multiplication for vectors and matrices. In t ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
LOGANTree  
Tree-Based Models for the Analysis of Log Files from Computer-Based Assessments
Enables researchers to model log-file data from computer-based assessments using machine-learning te ...
Download / Learn more Package Citations See dependency  
Maintainer: Qi Qin (view profile)

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA