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rxode2  

Facilities for Simulating from ODE-Based Models
View on CRAN: Click here


Download and install rxode2 package within the R console
Install from CRAN:
install.packages("rxode2")

Install from Github:
library("remotes")
install_github("cran/rxode2")

Install by package version:
library("remotes")
install_version("rxode2", "2.1.2")



Attach the package and use:
library("rxode2")
Maintained by
Matthew L. Fidler
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-05-09
Latest Update: 2023-04-22
Description:
Facilities for running simulations from ordinary differential equation ('ODE') models, such as pharmacometrics and other compartmental models.A compilation manager translates the ODE model into C, compiles it, and dynamically loads the object code into R for improved computational efficiency.An event table object facilitates the specification of complex dosing regimens (optional) and sampling schedules.NB: The use of this package requires both C and Fortran compilers, for details on their use with R please see Section 6.3, Appendix A, and Appendix D in the "R Administration and Installation" manual. Also the code is mostly released under GPL.The 'VODE' and 'LSODA' are in the public domain.The information is available in the inst/COPYRIGHTS.
How to cite:
Matthew L. Fidler (2022). rxode2: Facilities for Simulating from ODE-Based Models. R package version 2.1.2, https://cran.r-project.org/web/packages/rxode2
Previous versions and publish date:
2.0.6 (2022-05-09 09:00), 2.0.7 (2022-09-23 16:49), 2.0.8 (2022-09-23 04:50), 2.0.9 (2022-10-19 13:00), 2.0.10 (2022-10-20 23:12), 2.0.11 (2022-11-01 22:45), 2.0.12 (2023-03-28 08:30), 2.0.13 (2023-04-22 09:40), 2.0.14 (2023-10-07 07:00), 2.1.0 (2023-12-11 23:40), 2.1.1 (2023-12-13 10:50)
Other packages that cited rxode2 R package
View rxode2 citation profile
Other R packages that rxode2 depends, imports, suggests or enhances
Functions, R codes and Examples using the rxode2 R package
Some associated functions: as.ini . as.model . as.rxUi . assertRxUi . binomProbs . coef.rxode2 . dot-assertRenameErrorModelLine . dot-copyUi . dot-handleSingleErrTypeNormOrTFoceiBase . dot-iniGetAppendArg . dot-iniHandleAppend . dot-iniHandleLine . dot-matchesLangTemplate . dot-minfo . dot-modelHandleModelLines . dot-quoteCallInfoLines . dot-rxDocTable . dot-rxGetHiBoundaryPred1AndIni . dot-rxGetLambdaFromPred1AndIni . dot-rxGetLowBoundaryPred1AndIni . dot-rxGetPredictionDVTransform . dot-rxGetPredictionF . dot-rxGetPredictionFTransform . dot-rxGetVarianceForErrorType . dot-rxIsLinCmt . dot-rxJacobian . dot-rxLinCmtGen . dot-rxPrune . dot-rxSens . dot-rxWithOptions . dot-rxWithSink . dot-rxWithWd . dot-useUtf . erf . etTrans . findLhs . gammap . gammapDer . gammapInv . gammaq . gammaqInv . genShinyApp.template . getBaseIniSimModel . getBaseSimModel . getBaseSymengineModel . getRxThreads . guide_none . ini-set . ini . is.rxSolve . llikBeta . llikBinom . llikCauchy . llikChisq . llikExp . llikF . llikGamma . llikGeom . llikNbinom . llikNbinomMu . llikNorm . llikPois . llikT . llikUnif . llikWeibull . logit . lowergamma . meanProbs . model-set . model . modelExtract . odeMethodToInt . plot.rxSolve . plus-.rxSolve . print.rxCoef . print.rxDll . print.rxode2 . probit . reexports . rxAllowUnload . rxAppendModel . rxAssignControlValue . rxAssignPtr . rxBlockZeros . rxC . rxCat . rxChain . rxChain2 . rxClean . rxCombineErrorLines . rxCompile . rxCondition . rxControlUpdateSens . rxCreateCache . rxD . rxDelete . rxDemoteAddErr . rxDfdy . rxDll . rxDynLoad . rxDynUnload . rxErrTypeCombine . rxExpandFEta_ . rxExpandGrid . rxExpandGrid_ . rxExpandIfElse . rxExpandSens2_ . rxExpandSens_ . rxForget . rxFun . rxGetControl . rxGetDistributionSimulationLines . rxGetLin . rxGetModel . rxGetrxode2 . rxHtml . rxIndLinState . rxIndLinStrategy . rxIndLin_ . rxInits . rxInv . rxIs . rxIsCurrent . rxIsLoaded . rxLhs . rxLock . rxMd5 . rxModelVars . rxModels_ . rxNorm . rxOptExpr . rxParams . rxParseErr . rxParsePk . rxParsePred . rxPkg . rxPp . rxPreferredDistributionName . rxProgress . rxPrune . rxReload . rxRemoveControl . rxRename . rxRepR0_ . rxReservedKeywords . rxResidualError . rxS . rxSetControl . rxSetCovariateNamesForPiping . rxSetPipingAuto . rxSetProd . rxSetProgressBar . rxSetSilentErr . rxSetSum . rxSetupIni . rxSetupScale . rxShiny . rxSimThetaOmega . rxSolve . rxSolveFree . rxSplitPlusQ . rxState . rxSumProdModel . rxSupportedFuns . rxSuppressMsg . rxSymInvChol . rxSymInvCholCreate . rxSymInvCholN . rxSyncOptions . rxSyntaxFunctions . rxTempDir . rxTheme . rxToSE . rxTrans . rxUiDecompress . rxUiGet . rxUnloadAll . rxUse . rxValidate . rxVersion . rxbeta . rxbinom . rxcauchy . rxchisq . rxexp . rxf . rxgamma . rxgeom . rxnbinom . rxnormV . rxode2-set . rxode2 . rxord . rxpois . rxt . rxunif . rxweibull . stat_amt . stat_cens . summary.rxDll . summary.rxode2 . update.rxUi . uppergamma . zeroRe . 
Some associated R codes: DollarNames.R . RcppExports.R . asFunction.R . asIni.R . asModel.R . asRxui.R . assert.R . build.R . confint.R . dsl.R . err-foceiBase.R . err-sim.R . err.R . fixef.R . format.R . genShinyApp.template.R . geom-amt.R . geom-cens.R . getBaseSim.R . llik.R . modelExtract.R . modlib.R . mu-cov-downgrade.R . mu.R . nearpd.R . piping-ini.R . piping-model.R . piping-update.R . piping.R . plot.R . print.R . progress.R . reexport.R . rxFormat.R . rxIndLin.R . rxJacobian.R . rxLinCmt.R . rxOptExpr.R . rxParams.R . rxPrune.R . rxReservedKeywords.R . rxResidualError.R . rxShiny.R . rxSymInv.R . rxSyntaxFunctions.R . rxUiBlessed.R . rxUiGet.R . rxValidate.R . rxode-options.R . rxode2.R . rxode2_md5.R . rxrandom.R . rxsolve.R . str.R . summary.R . symengine.R . ui-assign-parts.R . ui-bind.R . ui-getControl.R . ui-rename.R . ui.R . units.R . utils.R . version.R .  Full rxode2 package functions and examples
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