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rxSeq  

Combined Total and Allele Specific Reads Sequencing Study
View on CRAN: Click here


Download and install rxSeq package within the R console
Install from CRAN:
install.packages("rxSeq")

Install from Github:
library("remotes")
install_github("cran/rxSeq")

Install by package version:
library("remotes")
install_version("rxSeq", "0.99.3")



Attach the package and use:
library("rxSeq")
Maintained by
Vasyl Zhabotynsky
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-12-01
Latest Update: 2016-12-01
Description:
Analysis of combined total and allele specific reads from the reciprocal cross study with RNA-seq data.
How to cite:
Vasyl Zhabotynsky (2016). rxSeq: Combined Total and Allele Specific Reads Sequencing Study. R package version 0.99.3, https://cran.r-project.org/web/packages/rxSeq
Previous versions and publish date:
No previous versions
Other packages that cited rxSeq R package
View rxSeq citation profile
Other R packages that rxSeq depends, imports, suggests or enhances
Functions, R codes and Examples using the rxSeq R package
Some associated functions: data.A . data.X . get.tausB . nLogLik . process . rcA . rcX . readCounts . simRX . trecase.A.out . trecase.X.out . 
Some associated R codes: get.better.R . get.inits.R . get.tauB.R . get.tausB.R . input.checks.A.R . input.checks.X.R . ll.aRC.R . ll.aRC.X.R . ll.aRC.theta.A.R . ll.aRC.theta.A1.R . ll.aRC.theta.A2.R . ll.aRC.theta.X.R . ll.jRCI.A.R . ll.jRCI.A.cons.R . ll.jRCI.A.cons1.R . ll.jRCI.A.cons2.R . ll.jRCI.A1.R . ll.jRCI.A2.R . ll.jRCI.X.R . ll.jRCI.ase.b0.A.R . ll.jRCI.ase.b0.A1.R . ll.jRCI.ase.b0.A2.R . ll.jRCI.ase.b0.X.R . ll.jRCI.b0.A.R . ll.jRCI.b0.A1.R . ll.jRCI.b0.A2.R . ll.jRCI.b0.X.R . ll.jRCI.b1.A.R . ll.jRCI.b1.A1.R . ll.jRCI.b1.A2.R . ll.jRCI.b1.X.R . ll.jRCI.sex.A.R . ll.jRCI.sex.X.R . ll.jRCI.sex.b0.A.R . ll.jRCI.sex.b0.X.R . ll.jRCI.sex.b1.A.R . ll.jRCI.trec.ase.A.R . ll.jRCI.trec.ase.A1.R . ll.jRCI.trec.ase.A2.R . ll.jRCI.trec.ase.X.R . ll.tRCI.A.R . ll.tRCI.X.R . ll.tRCI.iphi.A.R . ll.tRCI.iphi.X.R . ll.toRCI.A.R . ll.toRCI.X.R . ll.toRCI.b0.A.R . ll.toRCI.b0.A1.R . ll.toRCI.b0.A2.R . ll.toRCI.b0.X.R . ll.toRCI.iphi.A.R . ll.toRCI.iphi.X.R . ll.toRCI.sex.A.R . ll.toRCI.sex.X.R . ll.toRCI.sex.b0.A.R . ll.toRCI.sex.b0.X.R . logBB.R . loglikNB.R . loglikNB0.R . loglikNB1.R . loglikNB2.R . nLogLik.R . nLogLik.trec.A.R . nLogLik.trec.X.R . nLogLik.trecase.A.R . nLogLik.trecase.X.R . proc.trec.A.R . proc.trec.X.R . proc.trecase.A.R . proc.trecase.X.R . process.R . readCounts.R . simRX.R . test.R . trec.b0.A.R . trec.b0.X.R . trec.b1.A.R . trec.b1.X.R . trec.dev.X.R . trec.dom.A.R . trec.dom.X.R . trec.full.A.R . trec.full.X.R . trec.sex.A.R . trec.sex.X.R . trec.sex.b0.A.R . trec.sex.b0.X.R . trec.sex.b1.A.R . trec.sex.dom.A.R . trecase.ase.b0.A.R . trecase.ase.b0.X.R . trecase.b0.A.R . trecase.b0.X.R . trecase.b1.A.R . trecase.b1.X.R . trecase.dev.X.R . trecase.dom.A.R . trecase.dom.X.R . trecase.full.A.R . trecase.full.A.cons.R . trecase.full.X.R . trecase.sex.A.R . trecase.sex.X.R . trecase.sex.b0.A.R . trecase.sex.b0.X.R . trecase.sex.b1.A.R . trecase.sex.dom.A.R . trecase.trec.ase.A.R . trecase.trec.ase.X.R .  Full rxSeq package functions and examples
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