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ruv  

Detect and Remove Unwanted Variation using Negative Controls
View on CRAN: Click here


Download and install ruv package within the R console
Install from CRAN:
install.packages("ruv")

Install from Github:
library("remotes")
install_github("cran/ruv")

Install by package version:
library("remotes")
install_version("ruv", "0.9.7.1")



Attach the package and use:
library("ruv")
Maintained by
Johann Gagnon-Bartsch
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-10-24
Latest Update: 2019-08-30
Description:
Implements the 'RUV' (Remove Unwanted Variation) algorithms. These algorithms attempt to adjust for systematic errors of unknown origin in high-dimensional data. The algorithms were originally developed for use with genomic data, especially microarray data, but may be useful with other types of high-dimensional data as well. These algorithms were proposed in Gagnon-Bartsch and Speed (2012) , Gagnon-Bartsch, Jacob and Speed (2013), and Molania, et. al. (2019) . The algorithms require the user to specify a set of negative control variables, as described in the references. The algorithms included in this package are 'RUV-2', 'RUV-4', 'RUV-inv', 'RUV-rinv', 'RUV-I', and RUV-III', along with various supporting algorithms.
How to cite:
Johann Gagnon-Bartsch (2014). ruv: Detect and Remove Unwanted Variation using Negative Controls. R package version 0.9.7.1, https://cran.r-project.org/web/packages/ruv. Accessed 03 Dec. 2024.
Previous versions and publish date:
0.9.4 (2014-10-24 13:55), 0.9.5 (2015-05-20 14:15), 0.9.6 (2015-07-18 17:00), 0.9.7 (2018-03-12 20:19)
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