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rsahmi  

Single-Cell Analysis of Host-Microbiome Interactions
View on CRAN: Click here


Download and install rsahmi package within the R console
Install from CRAN:
install.packages("rsahmi")

Install from Github:
library("remotes")
install_github("cran/rsahmi")

Install by package version:
library("remotes")
install_version("rsahmi", "0.0.2")



Attach the package and use:
library("rsahmi")
Maintained by
Yun Peng
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-03-24
Latest Update: 2025-03-24
Description:
A computational resource designed to accurately detect microbial nucleic acids while filtering out contaminants and false-positive taxonomic assignments from standard transcriptomic sequencing of mammalian tissues. For more details, see Ghaddar (2023) <doi:10.1038/s43588-023-00507-1>. This implementation leverages the 'polars' package for fast and systematic microbial signal recovery and denoising from host tissue genomic sequencing.
How to cite:
Yun Peng (2025). rsahmi: Single-Cell Analysis of Host-Microbiome Interactions. R package version 0.0.2, https://cran.r-project.org/web/packages/rsahmi. Accessed 04 Jun. 2026.
Previous versions and publish date:
No previous versions
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View rsahmi citation profile
Other R packages that rsahmi depends, imports, suggests or enhances
Complete documentation for rsahmi
Functions, R codes and Examples using the rsahmi R package
Full rsahmi package functions and examples
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