Other packages > Find by keyword >

rsahmi  

Single-Cell Analysis of Host-Microbiome Interactions
View on CRAN: Click here


Download and install rsahmi package within the R console
Install from CRAN:
install.packages("rsahmi")

Install from Github:
library("remotes")
install_github("cran/rsahmi")

Install by package version:
library("remotes")
install_version("rsahmi", "0.0.2")



Attach the package and use:
library("rsahmi")
Maintained by
Yun Peng
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-03-24
Latest Update: 2025-03-24
Description:
A computational resource designed to accurately detect microbial nucleic acids while filtering out contaminants and false-positive taxonomic assignments from standard transcriptomic sequencing of mammalian tissues. For more details, see Ghaddar (2023) <doi:10.1038/s43588-023-00507-1>. This implementation leverages the 'polars' package for fast and systematic microbial signal recovery and denoising from host tissue genomic sequencing.
How to cite:
Yun Peng (2025). rsahmi: Single-Cell Analysis of Host-Microbiome Interactions. R package version 0.0.2, https://cran.r-project.org/web/packages/rsahmi. Accessed 06 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:53), 0.0.2 (2025-03-24 13:00)
Other packages that cited rsahmi R package
View rsahmi citation profile
Other R packages that rsahmi depends, imports, suggests or enhances
Complete documentation for rsahmi
Functions, R codes and Examples using the rsahmi R package
Full rsahmi package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

TMDb  
Access to TMDb API
Provides an R-interface to the TMDb API (see TMDb API on < ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
lsmeans  
Least-Squares Means
Obtain least-squares means for linear, generalized linear, and mixed models. Compute contrasts or l ...
Download / Learn more Package Citations See dependency  
SAMBA  
Selection and Misclassification Bias Adjustment for Logistic Regression Models
Health research using data from electronic health records (EHR) has gained popularity, but miscla ...
Download / Learn more Package Citations See dependency  
RRedshiftSQL  
R Interface to the 'Redshift' Database
Superclasses 'PostgreSQL' connection to help enable full 'dplyr' functionality on 'Redshift'. ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA