Other packages > Find by keyword >

rrnni  

Manipulate with RNNI Tree Space
View on CRAN: Click here


Download and install rrnni package within the R console
Install from CRAN:
install.packages("rrnni")

Install from Github:
library("remotes")
install_github("cran/rrnni")

Install by package version:
library("remotes")
install_version("rrnni", "0.1.1")



Attach the package and use:
library("rrnni")
Maintained by
Jiří C. Moravec
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-09-14
Latest Update: 2023-08-25
Description:
Calculate RNNI distance between and manipulate with ranked trees. RNNI stands for Ranked Nearest Neighbour Interchange and is an extension of the classical NNI space (space of trees created by the NNI moves) to ranked trees, where internal nodes are ordered according to their heights (usually assumed to be times). The RNNI distance takes the tree topology into account, as standard NNI does, but also penalizes changes in the order of internal nodes, i.e. changes in the order of times of evolutionary events. For more information about the RNNI space see: Gavryushkin et al. (2018) , Collienne & Gavryushkin (2021) , Collienne et al. (2021) , and Collienne (2021) .
How to cite:
Jiří C. Moravec (2022). rrnni: Manipulate with RNNI Tree Space. R package version 0.1.1, https://cran.r-project.org/web/packages/rrnni. Accessed 25 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:53), 0.1.0 (2022-09-14 08:50)
Other packages that cited rrnni R package
View rrnni citation profile
Other R packages that rrnni depends, imports, suggests or enhances
Complete documentation for rrnni
Functions, R codes and Examples using the rrnni R package
Some associated functions: as_ranked . common_tips . keep_tips . random_tree . rankedPhylo . read_newick . rmv . rnni . rrnni-package . sort_tips . tips . validate_rankedPhylo . 
Some associated R codes: Full rrnni package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

connectwidgets  
Organize and Curate Your Content Within 'Posit Connect'
A collection of helper functions and 'htmlwidgets' to help publishers curate content collections on ...
Download / Learn more Package Citations See dependency  
hwep  
Hardy-Weinberg Equilibrium in Polyploids
Inference concerning equilibrium and random mating in autopolyploids. Methods are available to test ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
missDiag  
Comparing Observed and Imputed Values under MAR and MCAR
Implements the computation of discrepancy statistics summarizing differences between the density of ...
Download / Learn more Package Citations See dependency  
commonsMath  
JAR Files of the Apache Commons Mathematics Library
'Java' JAR files for the Apache Commons Mathematics Library for use by users and other packages. ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA