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rphylo  

Phylogenetic Analysis with Dependent Discrete Models
View on CRAN: Click here


Download and install rphylo package within the R console
Install from CRAN:
install.packages("rphylo")

Install from Github:
library("remotes")
install_github("cran/rphylo")

Install by package version:
library("remotes")
install_version("rphylo", "0.1.1")



Attach the package and use:
library("rphylo")
Maintained by
Vivian G. Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-06-23
Latest Update: 2026-06-23
Description:
Implementation of dependent discrete models (with reversible jump MCMC) derived from 'BayesTraits' V5.0.3 <https://github.com/AndrewPMeade/BayesTraits-Release/tree/Release>. Original software copyright Andrew Meade and contributors, distributed under GPL-3. Modifications for this package by Vivian G. Li <liguo.vivian@gmail.com>. The following articles should be referenced when using this package: Pagel, M., A. Meade and D. Barker (2004) "Bayesian estimation of ancestral character states on phylogenies" <doi:10.1080/10635150490522232>; Pagel, M. (1994) "Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters" <doi:10.1098/rspb.1994.0006>; Pagel, M. and A. Meade (2006) "Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo" <doi:10.1086/503444>.
How to cite:
Vivian G. Li (2026). rphylo: Phylogenetic Analysis with Dependent Discrete Models. R package version 0.1.1, https://cran.r-project.org/web/packages/rphylo. Accessed 14 Jul. 2026.
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