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rotl
View on CRAN: Click
here
Download and install rotl package within the R console
Install from CRAN:
install.packages("rotl")
Install from Github:
library("remotes")
install_github("cran/rotl")
Install by package version:
library("remotes")
install_version("rotl", "3.1.0")
Attach the package and use:
library("rotl")
Maintained by
Francois Michonneau
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-07-24
Latest Update: 2023-06-15
Description:
An interface to the 'Open Tree of Life' API to retrieve
phylogenetic trees, information about studies used to assemble the
synthetic tree, and utilities to match taxonomic names to 'Open Tree
identifiers'. The 'Open Tree of Life' aims at assembling a
comprehensive phylogenetic tree for all named species.
How to cite:
Francois Michonneau (2015). rotl: Interface to the 'Open Tree of Life' API. R package version 3.1.0, https://cran.r-project.org/web/packages/rotl. Accessed 06 Nov. 2024.
Previous versions and publish date:
0.4.1 (2015-07-24 18:21), 0.5.0 (2016-02-03 12:26), 3.0.0 (2016-04-26 08:44), 3.0.1 (2016-09-20 00:45), 3.0.3 (2017-03-04 07:27), 3.0.4 (2018-04-03 09:44), 3.0.5 (2018-09-29 16:10), 3.0.6 (2019-01-20 15:00), 3.0.7 (2019-02-15 22:00), 3.0.9 (2019-06-14 17:50), 3.0.10 (2019-09-28 13:30), 3.0.11 (2020-10-22 11:40), 3.0.12 (2021-12-08 07:20), 3.0.14 (2022-10-06 22:40)
Other packages that cited rotl R package
View rotl citation profile
Other R packages that rotl depends,
imports, suggests or enhances
Complete documentation for rotl
Functions, R codes and Examples using
the rotl R package
Some associated functions: get_study . get_study_meta . get_study_subtree . get_study_tree . is_in_tree . list_trees . match_names-methods . match_names . rotl . source_list . strip_ott_ids . studies_find_studies . studies_find_trees . studies_properties . study_external_IDs . synonyms.match_names . tax_lineage . taxon_external_IDs . taxonomy-methods . taxonomy_about . taxonomy_mrca . taxonomy_subtree . taxonomy_taxon_info . tnrs_contexts . tnrs_infer_context . tnrs_match_names . tol_about . tol_induced_subtree . tol_mrca . tol_node_info . tol_subtree .
Some associated R codes: api-collections.R . api-studies.R . api-taxonomy.R . api-tnrs.R . api-tol.R . base.R . deduplicate_labels.R . external_data.R . is_in_tree.R . match_names.R . methods.R . rotl-package.R . studies-methods.R . studies-utils.R . studies.R . tax_utils.R . taxonomy.R . tnrs.R . tol.R . tree_to_labels.R . utils.R . Full rotl package functions and examples
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