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roots  

Reconstructing Ordered Ontogenic Trajectories
View on CRAN: Click here


Download and install roots package within the R console
Install from CRAN:
install.packages("roots")

Install from Github:
library("remotes")
install_github("cran/roots")

Install by package version:
library("remotes")
install_version("roots", "1.0")



Attach the package and use:
library("roots")
Maintained by
Wajid Jawaid
[Scholar Profile | Author Map]
First Published: 2017-07-11
Latest Update: 2017-07-11
Description:
A set of tools to reconstruct ordered ontogenic trajectories from single cell RNAseq data.
How to cite:
Wajid Jawaid (2017). roots: Reconstructing Ordered Ontogenic Trajectories. R package version 1.0, https://cran.r-project.org/web/packages/roots. Accessed 16 Apr. 2025.
Previous versions and publish date:
No previous versions
Other packages that cited roots R package
View roots citation profile
Other R packages that roots depends, imports, suggests or enhances
Complete documentation for roots
Functions, R codes and Examples using the roots R package
Some associated functions: animPlot . animPlotGif . applyGaussianKernelwithVariableSigma . bgGeneNorm . calculateVariableSigmas . colGrad . diffuseMat . diffuseProj . fastDist . filterGenes . findLouvain . fnc . getTraj . goggles . sparseMarkov . 
Some associated R codes: Full roots package functions and examples
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