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romic  

R for High-Dimensional Omic Data
View on CRAN: Click here


Download and install romic package within the R console
Install from CRAN:
install.packages("romic")

Install from Github:
library("remotes")
install_github("cran/romic")

Install by package version:
library("remotes")
install_version("romic", "1.1.3")



Attach the package and use:
library("romic")
Maintained by
Sean Hackett
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-07-20
Latest Update: 2023-09-21
Description:
Represents high-dimensional data as tables of features, samples and measurements, and a design list for tracking the meaning of individual variables. Using this format, filtering, normalization, and other transformations of a dataset can be carried out in a flexible manner. 'romic' takes advantage of these transformations to create interactive 'shiny' apps for exploratory data analysis such as an interactive heatmap.
How to cite:
Sean Hackett (2021). romic: R for High-Dimensional Omic Data. R package version 1.1.3, https://cran.r-project.org/web/packages/romic. Accessed 03 Feb. 2025.
Previous versions and publish date:
1.0.0 (2021-07-20 11:00), 1.1.1 (2023-02-02 23:30)
Other packages that cited romic R package
View romic citation profile
Other R packages that romic depends, imports, suggests or enhances
Complete documentation for romic
Functions, R codes and Examples using the romic R package
Some associated functions: add_pcs . app_flow . app_heatmap . app_pcs . brauer_2008 . center_tomic . check_tidy_omic . check_tomic . check_triple_omic . convert_wide_to_tidy_omic . create_tidy_omic . create_triple_omic . downsample_heatmap . export_tomic_as_tidy . export_tomic_as_triple . export_tomic_as_wide . filterInput . filterServer . filter_tomic . format_names_for_plotting . get_design_tbl . get_tomic_table . ggBivOutput . ggBivServer . ggUnivOutput . ggUnivServer . ggplotOutput . ggplotServer . hclust_order . impute_missing_values . infer_tomic_table_type . lassoInput . lassoServer . organizeInput . organizeServer . plot_bivariate . plot_heatmap . plot_univariate . plotsaverInput . plotsaverServer . prepare_example_datasets . reconcile_triple_omic . remove_missing_values . romic-package . shiny_filter_test . shiny_ggbiv_test . shiny_ggplot_test . shiny_gguniv_test . shiny_lasso_test . shiny_lasso_test_reactval . shiny_organize_test . shiny_plotsaver_test . shiny_sort_test . sortInput . sortServer . sort_tomic . sort_triple_arrange . sort_triple_hclust . tidy_to_triple . tomic_sort_status . tomic_to . triple_to_tidy . try_brushedPoints . update_tidy_omic . update_tomic . var_partial_match . 
Some associated R codes: app_flow.R . app_heatmap.R . app_pcs.R . data.R . data_classes.R . design.R . dim_reduction.R . export.R . filters.R . hclust.R . module_filter.R . module_ggbiv.R . module_ggplot.R . module_gguniv.R . module_lasso.R . module_organize.R . module_plotsaver.R . module_sort.R . mutates.R . romic-package.R . utils.R .  Full romic package functions and examples
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