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rnmamod  

Bayesian Network Meta-Analysis with Missing Participants
View on CRAN: Click here


Download and install rnmamod package within the R console
Install from CRAN:
install.packages("rnmamod")

Install from Github:
library("remotes")
install_github("cran/rnmamod")

Install by package version:
library("remotes")
install_version("rnmamod", "0.4.0")



Attach the package and use:
library("rnmamod")
Maintained by
Loukia Spineli
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-11-29
Latest Update: 2022-11-01
Description:
A comprehensive suite of functions to perform and visualise pairwise and network meta-analysis with aggregate binary or continuous missing participant outcome data. The package covers core Bayesian one-stage models implemented in a systematic review with multiple interventions, including fixed-effect and random-effects network meta-analysis, meta-regression, evaluation of the consistency assumption via the node-splitting approach and the unrelated mean effects model, and sensitivity analysis. Missing participant outcome data are addressed in all models of the package. The robustness to primary analysis results can also be investigated using a novel intuitive index. Methods to evaluate the transitivity assumption quantitatively are provided. The package also offers a rich, user-friendly visualisation toolkit that aids in appraising and interpreting the results thoroughly and preparing the manuscript for journal submission. The visualisation tools comprise the network plot, forest plots, panel of diagnostic plots, heatmaps on the extent of missing participant outcome data in the network, league heatmaps on estimation and prediction, rankograms, Bland-Altman plot, leverage plot, deviance scatterplot, heatmap of robustness, barplot of Kullback-Leibler divergence, heatmap of comparison dissimilarities and dendrogram of comparison clustering. The package also allows the user to export the results to an Excel file at the working directory.
How to cite:
Loukia Spineli (2021). rnmamod: Bayesian Network Meta-Analysis with Missing Participants. R package version 0.4.0, https://cran.r-project.org/web/packages/rnmamod
Previous versions and publish date:
0.1.0 (2021-11-29 21:00), 0.2.0 (2022-04-06 19:40), 0.3.0 (2022-11-01 11:44)
Other packages that cited rnmamod R package
View rnmamod citation profile
Other R packages that rnmamod depends, imports, suggests or enhances
Functions, R codes and Examples using the rnmamod R package
Some associated functions: balloon_plot . baseline_model . bland_altman_plot . data_preparation . describe_network . forestplot . forestplot_metareg . heatmap_missing_dataset . heatmap_missing_network . heatmap_robustness . heterogeneity_param_prior . improved_ume . intervalplot_panel_ume . kld_barplot . league_heatmap . league_heatmap_pred . league_table_absolute . league_table_absolute_user . leverage_plot . mcmc_diagnostics . metareg_plot . missingness_param_prior . netplot . nma.baker2009 . nma.bottomley2011 . nma.dogliotti2014 . nma.liu2013 . nma.schwingshackl2014 . nma.stowe2011 . nodesplit_plot . pma.hetrick2012 . pma.taylor2004 . prepare_model . prepare_nodesplit . prepare_ume . rankosucra_plot . rnmamod-package . robustness_index . robustness_index_user . run_metareg . run_model . run_nodesplit . run_sensitivity . run_series_meta . run_ume . scatterplot_sucra . scatterplots_dev . series_meta_plot . taylor_continuous . taylor_imor . trans_quality . ume_plot . unrelated_effects_plot . 
Some associated R codes: Basetreat_function.R . KLD.barplot_function.R . NonbaseSweep_function.R . PairXY_function.R . Sweeptreat_function.R . Taylor.IMDoM.IMRoM_function.R . Taylor.IMOR_function.R . UME.plot_function.R . balloon.plot.mod_function.R . baseline.model_function.R . bland_altman.plot_function.R . data.preparation_function.R . datasets.R . describe.network_function.R . effect.measure.name_function.R . forestplot.metareg_function.R . forestplot_function.R . globals.R . heatmap.missing.dataset_function.R . heatmap.missing.network_function.R . heatmap.robustness_function.R . heterogeneity.param.prior_function.R . improved.UME_function.R . intervalplot.panel.UME_function.R . league.heatmap.pred_function.R . league.heatmap_function.R . league.table.absolute.user_function.R . league.table.absolute_function.R . leverage.plot_function.R . mcmc.diagnostics_function.R . metareg.plot_function.R . missingness.param.prior_function.R . network.plot_function.R . nodesplit.plot_function.R . possibleserved.comparisons_function.R . prepare.UME_function.R . prepare.model_function.R . prepare.nodesplit_function.R . quality.transitivity_function.R . rankosucra.plot_function.R . rnmamod.R.R . robustness.index.user_function.R . robustness.index_function.R . run.UME_function.R . run.metareg_function.R . run.model_function.R . run.nodesplit_function.R . run.sensitivity_function.R . run.series.meta_function.R . scatterplot.sucra_function.R . scatterplots.deviance_function.R . series.meta.plot_function.R . unrelated.effects.plot_function.R.R .  Full rnmamod package functions and examples
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