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rhierbaps  

Clustering Genetic Sequence Data Using the HierBAPS Algorithm
View on CRAN: Click here


Download and install rhierbaps package within the R console
Install from CRAN:
install.packages("rhierbaps")

Install from Github:
library("remotes")
install_github("cran/rhierbaps")

Install by package version:
library("remotes")
install_version("rhierbaps", "1.1.4")



Attach the package and use:
library("rhierbaps")
Maintained by
Gerry Tonkin-Hill
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-07-20
Latest Update: 2022-11-18
Description:
Implements the hierarchical Bayesian analysis of populations structure (hierBAPS) algorithm of Cheng et al. (2013) for clustering DNA sequences from multiple sequence alignments in FASTA format. The implementation includes improved defaults and plotting capabilities and unlike the original 'MATLAB' version removes singleton SNPs by default.
How to cite:
Gerry Tonkin-Hill (2018). rhierbaps: Clustering Genetic Sequence Data Using the HierBAPS Algorithm. R package version 1.1.4, https://cran.r-project.org/web/packages/rhierbaps. Accessed 21 Nov. 2024.
Previous versions and publish date:
1.0.0 (2018-07-20 20:00), 1.1.0 (2018-10-10 16:10), 1.1.2 (2019-05-10 00:50), 1.1.3 (2019-12-11 15:20)
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