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respR  

Import, Process, Analyse, and Calculate Rates from Respirometry Data
View on CRAN: Click here


Download and install respR package within the R console
Install from CRAN:
install.packages("respR")

Install from Github:
library("remotes")
install_github("cran/respR")

Install by package version:
library("remotes")
install_version("respR", "2.3.4")



Attach the package and use:
library("respR")
Maintained by
Nicholas Carey
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-02-16
Latest Update: 2025-09-03
Description:
Provides a structural, reproducible workflow for the processing and analysis of respirometry data. It contains analytical functions and utilities for working with oxygen time-series to determine respiration or oxygen production rates, and to make it easier to report and share analyses. See Harianto et al. 2019 .
How to cite:
Nicholas Carey (2022). respR: Import, Process, Analyse, and Calculate Rates from Respirometry Data. R package version 2.3.4, https://cran.r-project.org/web/packages/respR. Accessed 09 Oct. 2026.
Previous versions and publish date:
(2026-07-09 06:50), 2.0.0 (2022-02-16 21:20), 2.0.1 (2022-03-14 19:40), 2.0.2 (2022-03-23 16:50), 2.1.0 (2022-12-08 11:30), 2.2.0 (2023-01-06 14:30), 2.3.0 (2023-06-05 09:50), 2.3.1 (2023-06-29 16:30), 2.3.2 (2023-11-16 17:50), 2.3.3 (2024-05-10 11:50)
Other packages that cited respR R package
View respR citation profile
Other R packages that respR depends, imports, suggests or enhances
Complete documentation for respR
Functions, R codes and Examples using the respR R package
Some associated functions: StP.check . StP.val . adjust_rate.ft . adjust_rate . adjust_scale . adjust_scale_area . algae.rd . auto_rate.int . auto_rate . auto_rate.rep . auto_rate_highest . auto_rate_interval . auto_rate_linear . auto_rate_lowest . auto_rate_max . auto_rate_min . auto_rate_rolling . background_con.rd . background_exp.rd . background_lin.rd . broken_stick . calc_rate.bg . calc_rate.ft . calc_rate.int . calc_rate . calc_rate.rep . calc_win . class.val . convert_DO . convert_MR . convert_MR_print . convert_rate.ft . convert_rate . convert_val . extract_indices . flow_unit_parse . flowthrough.rd . flowthrough_mult.rd . flowthrough_sim.rd . format_time . generate_mrdf . get_dec . grapes-greater-than-grapes . import_file . inspect.ft . inspect . intermittent.rd . kernel_method . linear_fit . mean.adjust_rate.ft . mean.adjust_rate . mean.auto_rate.int . mean.auto_rate . mean.calc_rate.bg . mean.calc_rate.ft . mean.calc_rate.int . mean.calc_rate . mean.convert_DO . mean.convert_rate.ft . mean.convert_rate . mean.inspect.ft . mean.inspect . mean.oxy_crit . method.val . midpt . nainf.omit . overlap.ft.p . overlap.p . oxy_crit . plot.adjust_rate.ft . plot.adjust_rate . plot.auto_rate.int . plot.auto_rate . plot.calc_rate.bg . plot.calc_rate.ft . plot.calc_rate.int . plot.calc_rate . plot.convert_DO . plot.convert_rate.ft . plot.convert_rate . plot.inspect.ft . plot.inspect . plot.oxy_crit . plot.test_lin . print.adjust_rate.ft . print.adjust_rate . print.auto_rate.int . print.auto_rate . print.calc_rate.bg . print.calc_rate.ft . print.calc_rate.int . print.calc_rate . print.convert_DO . print.convert_rate.ft . print.convert_rate . print.inspect.ft . print.inspect . print.oxy_crit . print_dens . rolling_reg_row . rolling_reg_time . sardine.rd . select . select_rate . sim_data . squid.rd . static_roll . subsample . subset_data . summary.adjust_rate.ft . summary.adjust_rate . summary.auto_rate.int . summary.auto_rate . summary.calc_rate.bg . summary.calc_rate.ft . summary.calc_rate.int . summary.calc_rate . summary.convert_DO . summary.convert_rate.ft . summary.convert_rate . summary.inspect.ft . summary.inspect . summary.oxy_crit . test_lin . time_lm . time_roll . unit_args . unit_type . unit_type_o1 . units.clean . units.val . urchins.rd . validate_auto_rate . zeb_intermittent.rd . 
Some associated R codes: adjust_rate.R . adjust_rate.ft.R . auto_rate.R . auto_rate.int.R . auto_rate_funs.R . calc_rate.R . calc_rate.bg.R . calc_rate.ft.R . calc_rate.int.R . convert_DO.R . convert_MR.R . convert_rate.R . convert_rate.ft.R . convert_val.R . data.R . format_time.R . import_file.R . inspect.R . inspect.ft.R . oxy_crit.R . respR.R . select_rate.R . select_rate.ft.R . sim_data.R . startup.R . subsample.R . subset_data.R . test_lin.R . unit_args.R . util_funs.R . util_plots.R . util_val.R .  Full respR package functions and examples
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