R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
rehh
View on CRAN: Click
here
Download and install rehh package within the R console
Install from CRAN:
install.packages("rehh")
Install from Github:
library("remotes")
install_github("cran/rehh")
Install by package version:
library("remotes")
install_version("rehh", "3.2.2")
Attach the package and use:
library("rehh")
Maintained by
Alexander Klassmann
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-03-15
Latest Update: 2021-09-15
Description:
Population genetic data such as 'Single Nucleotide
Polymorphisms' (SNPs) is often used to identify genomic regions
that have been under recent natural or artificial selection
and might provide clues about the molecular mechanisms of adaptation.
One approach, the concept of an 'Extended Haplotype Homozygosity' (EHH),
introduced by (Sabeti 2002) , has given rise to
several statistics designed for whole genome scans.
The package provides functions to compute three of these,
namely: 'iHS' (Voight 2006) for
detecting positive or 'Darwinian' selection within a single population as well as
'Rsb' (Tang 2007) and
'XP-EHH' (Sabeti 2007) , targeted
at differential selection between two populations.
Various plotting functions are included to facilitate
visualization and interpretation of these statistics.
How to cite:
Alexander Klassmann (2012). rehh: Searching for Footprints of Selection using 'Extended Haplotype Homozygosity' Based Tests. R package version 3.2.2, https://cran.r-project.org/web/packages/rehh. Accessed 06 Nov. 2024.
Previous versions and publish date:
1.0 (2012-03-15 15:39), 1.1 (2013-04-26 14:30), 1.11 (2013-08-26 16:18), 1.12 (2015-04-07 16:01), 1.13 (2015-05-13 19:55), 2.0.0 (2016-08-01 15:35), 2.0.1 (2016-10-25 20:47), 2.0.2 (2016-11-18 12:43), 2.0.3 (2019-02-04 13:20), 2.0.4 (2019-02-13 17:20), 3.0.0 (2019-07-09 14:00), 3.0.1 (2019-07-11 15:42), 3.1.0 (2020-03-04 11:10), 3.1.1 (2020-06-19 12:00), 3.1.2 (2020-07-17 12:30), 3.2.0 (2020-11-01 11:00), 3.2.1 (2020-11-09 23:10)
Other packages that cited rehh R package
View rehh citation profile
Other R packages that rehh depends,
imports, suggests or enhances
Complete documentation for rehh
Functions, R codes and Examples using
the rehh R package
Some associated functions: allelefurcation-class . as.newick . calc_candidate_regions . calc_ehh . calc_ehhs . calc_furcation . calc_haplen . calc_pairwise_haplen . calc_region_stats . calc_sfs_tests . data2haplohh . distribplot . extract_regions . freqbinplot . ftree-class . furcation-class . haplen-class . haplohh-class . haplohh2sweepfinder . haplohh_cgu_bta12 . ies2xpehh . ihh2ihs . ines2rsb . make.example.files . manhattanplot . plot.ehh . plot.ehhs . plot.furcation . plot.haplen . plot.haplohh . rehh-package . remove.example.files . scan_hh . scan_hh_full . subset.haplohh . update_haplohh .
Some associated R codes: as.newick.R . calc_candidate_regions.R . calc_ehh.R . calc_ehhs.R . calc_furcation.R . calc_haplen.R . calc_pairwise_haplen.R . calc_region_stats.R . calc_sfs_tests.R . data2haplohh.R . distribplot.R . extract_regions.R . freqbinplot.R . furcation-class.R . haplohh-class.R . haplohh2sweepfinder.R . ies2xpehh.R . ihh2ihs.R . ines2rsb.R . make.example.files.R . manhattanplot.R . plot.ehh.R . plot.ehhs.R . plot.furcation.R . plot.haplen.R . plot.haplohh.R . rehh.R . scan_hh.R . scan_hh_full.R . subset.haplohh.R . update_haplohh.R . Full rehh package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
seriation
Infrastructure for ordering objects with an implementation of several
seriation/sequencing/ordinati ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Michael Hahsler (view profile)
equatiomatic
The goal of equatiomatic is to reduce the painassociated with writing LaTeX formulas from fitted mod ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Philippe Grosjean (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
mailR
Interface to Apache Commons Email to send emails
from R. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Rahul Premraj (view profile)
memoise
Cache the results of a function so that when you
call it again with the same arguments it returns t ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Winston Chang (view profile)
maic
A generalised workflow for generation of subject weights to be
used in Matching-Adjusted Indirect C ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Rob Young (view profile)