Other packages > Find by keyword >

refdb  

A DNA Reference Library Manager
View on CRAN: Click here


Download and install refdb package within the R console
Install from CRAN:
install.packages("refdb")

Install from Github:
library("remotes")
install_github("cran/refdb")

Install by package version:
library("remotes")
install_version("refdb", "0.1.2")



Attach the package and use:
library("refdb")
Maintained by
Francois Keck
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-09-19
Latest Update:
Description:
Reference database manager offering a set of functions to import, organize, clean, filter, audit and export reference genetic data. Provide functions to download sequence data from Bold Systems () and NCBI GenBank . Designed as an environment for semi-automatic and assisted construction of reference databases and to improve standardization and repeatability in barcoding and metabarcoding studies.
How to cite:
Francois Keck (2022). refdb: A DNA Reference Library Manager. R package version 0.1.2, https://cran.r-project.org/web/packages/refdb. Accessed 08 Mar. 2026.
Previous versions and publish date:
0.1.0 (2022-09-19 10:26), 0.1.1 (2022-09-22 19:00), 0.1.2 (2025-12-19 21:20)
Other packages that cited refdb R package
View refdb citation profile
Other R packages that refdb depends, imports, suggests or enhances
Complete documentation for refdb
Functions, R codes and Examples using the refdb R package
Some associated functions: check_fields . fields_dbs . filter_scores . get_ncbi_taxonomy . igraph_from_taxo . make_ncbi_table . ncbi_taxo_rank . process_geo_ncbi . refdb-package . refdb_check_seq_conflict . refdb_check_seq_homogeneity . refdb_check_tax_conflict . refdb_check_tax_typo . refdb_clean_seq_crop_primers . refdb_clean_seq_remove_gaps . refdb_clean_seq_remove_sideN . refdb_clean_tax_NA . refdb_clean_tax_harmonize_nomenclature . refdb_clean_tax_remove_blank . refdb_clean_tax_remove_extra . refdb_clean_tax_remove_subsp . refdb_clean_tax_remove_uncertainty . refdb_export_dada2 . refdb_export_idtaxa . refdb_export_mothur . refdb_fill_tax_downstream . refdb_fill_tax_upstream . refdb_filter_ref_scope . refdb_filter_seq_ambiguous . refdb_filter_seq_duplicates . refdb_filter_seq_homopolymers . refdb_filter_seq_length . refdb_filter_seq_primer . refdb_filter_seq_stopcodon . refdb_filter_tax_na . refdb_filter_tax_precision . refdb_get_fields . refdb_import_BOLD . refdb_import_NCBI . refdb_merge . refdb_plot_map . refdb_plot_seqlen_hist . refdb_plot_tax_barplot . refdb_plot_tax_tree . refdb_plot_tax_treemap . refdb_report . refdb_sample_tax . refdb_set_fields . refdb_set_ncbitax . refdb_write_fields . valid_taxo_rank . xml_extract . 
Some associated R codes: fields.R . import_BOLD.R . import_NCBI.R . refdb-package.R . refdb_checks.R . refdb_clean.R . refdb_export.R . refdb_fill_taxo.R . refdb_filter.R . refdb_merge.R . refdb_ncbi_taxonomy.R . refdb_plots.R . refdb_sample.R .  Full refdb package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
osmextract  
Download and Import Open Street Map Data Extracts
Match, download, convert and import Open Street Map data extracts obtained from several providers. ...
Download / Learn more Package Citations See dependency  
MultivariateAnalysis  
Pacote Para Analise Multivariada
Package with multivariate analysis methodologies for experiment evaluation. The package estimates d ...
Download / Learn more Package Citations See dependency  
RCPA3  
Data and Functions for R Companion to Political Analysis 3rd Ed
Bundles the datasets and functions featured in Philip H. Pollock and Barry C. Edwards ...
Download / Learn more Package Citations See dependency  
GMKMcharlie  
Unsupervised Gaussian Mixture and Minkowski and Spherical K-Means with Constraints
High performance trainers for parameterizing and clustering weighted data. The Gaussian mixture (GM) ...
Download / Learn more Package Citations See dependency  

26,293

R Packages

223,360

Dependencies

70,376

Author Associations

26,294

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA