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rbioapi  

User-Friendly R Interface to Biologic Web Services' API
View on CRAN: Click here


Download and install rbioapi package within the R console
Install from CRAN:
install.packages("rbioapi")

Install from Github:
library("remotes")
install_github("cran/rbioapi")

Install by package version:
library("remotes")
install_version("rbioapi", "0.8.1")



Attach the package and use:
library("rbioapi")
Maintained by
Moosa Rezwani
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-04-30
Latest Update: 2023-09-30
Description:
Currently fully supports Enrichr, JASPAR, miEAA, PANTHER, Reactome, STRING, and UniProt! The goal of rbioapi is to provide a user-friendly and consistent interface to biological databases and services. In a way that insulates the user from the technicalities of using web services API and creates a unified and easy-to-use interface to biological and medical web services. This is an ongoing project; New databases and services will be added periodically. Feel free to suggest any databases or services you often use.
How to cite:
Moosa Rezwani (2021). rbioapi: User-Friendly R Interface to Biologic Web Services' API. R package version 0.8.1, https://cran.r-project.org/web/packages/rbioapi. Accessed 21 Dec. 2024.
Previous versions and publish date:
0.7.0 (2021-04-30 14:30), 0.7.4 (2021-06-22 10:00), 0.7.6 (2022-04-05 09:10), 0.7.7 (2022-08-08 15:40), 0.7.8 (2023-05-02 11:00), 0.7.9 (2023-05-10 01:30), 0.8.0 (2023-09-30 15:10)
Other packages that cited rbioapi R package
View rbioapi citation profile
Other R packages that rbioapi depends, imports, suggests or enhances
Complete documentation for rbioapi
Functions, R codes and Examples using the rbioapi R package
Some associated functions: rba_connection_test . rba_enrichr . rba_enrichr_add_list . rba_enrichr_enrich . rba_enrichr_gene_map . rba_enrichr_libs . rba_enrichr_view_list . rba_jaspar_collections . rba_jaspar_collections_matrices . rba_jaspar_matrix . rba_jaspar_matrix_search . rba_jaspar_matrix_versions . rba_jaspar_releases . rba_jaspar_sites . rba_jaspar_species . rba_jaspar_species_matrices . rba_jaspar_taxons . rba_jaspar_taxons_matrices . rba_jaspar_tffm . rba_jaspar_tffm_search . rba_mieaa_cats . rba_mieaa_convert_type . rba_mieaa_convert_version . rba_mieaa_enrich . rba_mieaa_enrich_results . rba_mieaa_enrich_status . rba_mieaa_enrich_submit . rba_options . rba_pages . rba_panther_enrich . rba_panther_family . rba_panther_homolog . rba_panther_info . rba_panther_mapping . rba_panther_ortholog . rba_panther_tree_grafter . rba_reactome_analysis . rba_reactome_analysis_download . rba_reactome_analysis_import . rba_reactome_analysis_mapping . rba_reactome_analysis_pdf . rba_reactome_analysis_species . rba_reactome_analysis_token . rba_reactome_complex_list . rba_reactome_complex_subunits . rba_reactome_diseases . rba_reactome_entity_other_forms . rba_reactome_event_ancestors . rba_reactome_event_hierarchy . rba_reactome_exporter_diagram . rba_reactome_exporter_event . rba_reactome_exporter_overview . rba_reactome_exporter_reaction . rba_reactome_interactors_psicquic . rba_reactome_interactors_static . rba_reactome_mapping . rba_reactome_orthology . rba_reactome_participant_of . rba_reactome_participants . rba_reactome_pathways_events . rba_reactome_pathways_low . rba_reactome_pathways_top . rba_reactome_people_id . rba_reactome_people_name . rba_reactome_query . rba_reactome_species . rba_reactome_version . rba_reactome_xref . rba_string_annotations . rba_string_enrichment . rba_string_enrichment_ppi . rba_string_homology_inter . rba_string_homology_intra . rba_string_interaction_partners . rba_string_interactions_network . rba_string_map_ids . rba_string_network_image . rba_string_version . rba_uniprot_antigens . rba_uniprot_antigens_search . rba_uniprot_coordinates . rba_uniprot_coordinates_location . rba_uniprot_coordinates_search . rba_uniprot_coordinates_sequence . rba_uniprot_features . rba_uniprot_features_search . rba_uniprot_genecentric . rba_uniprot_genecentric_search . rba_uniprot_mutagenesis . rba_uniprot_mutagenesis_search . rba_uniprot_proteins . rba_uniprot_proteins_crossref . rba_uniprot_proteins_search . rba_uniprot_proteomes . rba_uniprot_proteomes_search . rba_uniprot_proteomics . rba_uniprot_proteomics_search . rba_uniprot_ptm . rba_uniprot_ptm_search . rba_uniprot_taxonomy . rba_uniprot_taxonomy_lca . rba_uniprot_taxonomy_lineage . rba_uniprot_taxonomy_name . rba_uniprot_taxonomy_path . rba_uniprot_taxonomy_relationship . rba_uniprot_uniparc . rba_uniprot_uniparc_bestguess . rba_uniprot_uniparc_search . rba_uniprot_uniparc_sequence . rba_uniprot_variation . rba_uniprot_variation_search . rbioapi . 
Some associated R codes: enrichr.R . helper_functions.R . internal_functions.R . jaspar.R . mieaa.R . panther.R . reactome_analysis.R . reactome_content.R . stringdb.R . uniprot_coordinates.R . uniprot_proteins.R . uniprot_proteomes.R . uniprot_taxonomy.R . uniprot_uniparc.R . zzz.R .  Full rbioapi package functions and examples
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