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rbcmodel  

Model Rubisco Carboxylation Rate Across Temperature, CO2, and O2
View on CRAN: Click here


Download and install rbcmodel package within the R console
Install from CRAN:
install.packages("rbcmodel")

Install from Github:
library("remotes")
install_github("cran/rbcmodel")

Install by package version:
library("remotes")
install_version("rbcmodel", "1.0.1")



Attach the package and use:
library("rbcmodel")
Maintained by
Kaitlin Harrison
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-08-04
Latest Update: 2026-08-04
Description:
Collects published kinetics of ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco) and uses these kinetics to model the carboxylation rate across CO2 and O2 concentrations and different temperatures. The carboxylation rate can be modeled as the gross rate or the net rate, which takes into account the oxygenase activity of the enzyme using one of the three known phosphoglycolate salvage pathways. Custom enzymes and temperature dependences can be created with user kinetics, or published kinetics can be accessed through a meta-analysis contained within the package. An expansion of methods from Harrison et al. (2025) <doi:10.1128/aem.00604-25>.
How to cite:
Kaitlin Harrison (2026). rbcmodel: Model Rubisco Carboxylation Rate Across Temperature, CO2, and O2. R package version 1.0.1, https://cran.r-project.org/web/packages/rbcmodel. Accessed 05 Oct. 2026.
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