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randomGODB  

Random GO Database
View on CRAN: Click here


Download and install randomGODB package within the R console
Install from CRAN:
install.packages("randomGODB")

Install from Github:
library("remotes")
install_github("cran/randomGODB")

Install by package version:
library("remotes")
install_version("randomGODB", "1.1")



Attach the package and use:
library("randomGODB")
Maintained by
Barry Zeeberg
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-05-07
Latest Update: 2025-05-07
Description:
The Gene Ontology (GO) Consortium <https://geneontology.org/> organizes genes into hierarchical categories based on biological process (BP), molecular function (MF) and cellular component (CC, i.e., subcellular localization). Tools such as 'GoMiner' (see Zeeberg, B.R., Feng, W., Wang, G. et al. (2003) <doi:10.1186/gb-2003-4-4-r28>) can leverage GO to perform ontological analysis of microarray and proteomics studies, typically generating a list of significant functional categories. The significance is traditionally determined by randomizing the input gene list to computing the false discovery rate (FDR) of the enrichment p-value for each category. We explore here the novel alternative of randomizing the GO database rather than the gene list.
How to cite:
Barry Zeeberg (2025). randomGODB: Random GO Database. R package version 1.1, https://cran.r-project.org/web/packages/randomGODB. Accessed 12 Sep. 2026.
Previous versions and publish date:
(2026-07-09 06:48), 1.0 (2025-05-07 14:10)
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Complete documentation for randomGODB
Functions, R codes and Examples using the randomGODB R package
Full randomGODB package functions and examples
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