Other packages > Find by keyword >

randomGODB  

Random GO Database
View on CRAN: Click here


Download and install randomGODB package within the R console
Install from CRAN:
install.packages("randomGODB")

Install from Github:
library("remotes")
install_github("cran/randomGODB")

Install by package version:
library("remotes")
install_version("randomGODB", "1.1")



Attach the package and use:
library("randomGODB")
Maintained by
Barry Zeeberg
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-05-07
Latest Update: 2025-05-07
Description:
The Gene Ontology (GO) Consortium <https://geneontology.org/> organizes genes into hierarchical categories based on biological process (BP), molecular function (MF) and cellular component (CC, i.e., subcellular localization). Tools such as 'GoMiner' (see Zeeberg, B.R., Feng, W., Wang, G. et al. (2003) <doi:10.1186/gb-2003-4-4-r28>) can leverage GO to perform ontological analysis of microarray and proteomics studies, typically generating a list of significant functional categories. The significance is traditionally determined by randomizing the input gene list to computing the false discovery rate (FDR) of the enrichment p-value for each category. We explore here the novel alternative of randomizing the GO database rather than the gene list.
How to cite:
Barry Zeeberg (2025). randomGODB: Random GO Database. R package version 1.1, https://cran.r-project.org/web/packages/randomGODB. Accessed 07 Jun. 2026.
Previous versions and publish date:
1.0 (2025-05-07 14:10)
Other packages that cited randomGODB R package
View randomGODB citation profile
Other R packages that randomGODB depends, imports, suggests or enhances
Complete documentation for randomGODB
Functions, R codes and Examples using the randomGODB R package
Full randomGODB package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

embryogrowth  
Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Tools to analyze the embryo growth and the sexualisation thermal reaction norms. See ...
Download / Learn more Package Citations See dependency  
gRain  
Bayesian Networks
Probability propagation in graphical independence networks, also known as Bayesian networks or prob ...
Download / Learn more Package Citations See dependency  
xmlr  
Read, Write and Work with 'XML' Data
'XML' package for creating and reading and manipulating 'XML', with an object model based on 'Refere ...
Download / Learn more Package Citations See dependency  
keep  
Arrays with Better Control over Dimension Dropping
Provides arrays with flexible control over dimension dropping when subscripting. ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
roxygen2  
In-Line Documentation for R
Generate your Rd documentation, 'NAMESPACE' file, and collation field using specially formatted com ...
Download / Learn more Package Citations See dependency  

27,372

R Packages

233,548

Dependencies

72,820

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA