Other packages > Find by keyword >

rSEA  

Simultaneous Enrichment Analysis
View on CRAN: Click here


Download and install rSEA package within the R console
Install from CRAN:
install.packages("rSEA")

Install from Github:
library("remotes")
install_github("cran/rSEA")

Install by package version:
library("remotes")
install_version("rSEA", "2.1.2")



Attach the package and use:
library("rSEA")
Maintained by
Mitra Ebrahimpoor
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-11-30
Latest Update: 2020-03-23
Description:
SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to the threshold c", where c is selected by the user. Family-wise error rate control is provided through use of closed testing with Simes test. For more information on closed testing with Simes see Goeman et al. (2019) and for more information about the properties and performance of SEA procedure see Ebrahimpoor et al. (2019) .
How to cite:
Mitra Ebrahimpoor (2018). rSEA: Simultaneous Enrichment Analysis. R package version 2.1.2, https://cran.r-project.org/web/packages/rSEA. Accessed 05 Jan. 2025.
Previous versions and publish date:
1.0.1 (2019-02-21 16:00), 1.0 (2018-11-30 17:50), 2.0.0 (2019-10-03 13:40), 2.1.0 (2019-10-06 23:40), 2.1.1 (2020-03-23 12:30)
Other packages that cited rSEA R package
View rSEA citation profile
Other R packages that rSEA depends, imports, suggests or enhances
Complete documentation for rSEA
Functions, R codes and Examples using the rSEA R package
Some associated functions: SEA . plotSEA . rSEA-package . setTDP . setTest . topSEA . 
Some associated R codes: plotsea.R . sea.R . settdp.R . settest.R . topsea.R .  Full rSEA package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
uclust  
Clustering and Classification Inference with U-Statistics
Clustering and classification inference for high dimension low sample size (HDLSS) data with U-stati ...
Download / Learn more Package Citations See dependency  
interplot  
Plot the Effects of Variables in Interaction Terms
Plots the conditional coefficients ("marginal effects") of variables included in multiplicative int ...
Download / Learn more Package Citations See dependency  
Maintainer: Yue Hu (view profile)
GFisher  
Generalized Fisher's Combination Tests Under Dependence
Accurate and computationally efficient p-value calculation methods for a general family of Fisher ty ...
Download / Learn more Package Citations See dependency  
ENMeval  
Automated Tuning and Evaluations of Ecological Niche Models
Runs ecological niche models over all combinations of user-defined settings (i.e., tuning), performs ...
Download / Learn more Package Citations See dependency  
bama  
High Dimensional Bayesian Mediation Analysis
Perform mediation analysis in the presence of high-dimensional mediators based on the potential out ...
Download / Learn more Package Citations See dependency  

23,440

R Packages

202,297

Dependencies

63,567

Author Associations

23,434

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA