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rSEA
View on CRAN: Click
here
Download and install rSEA package within the R console
Install from CRAN:
install.packages("rSEA")
Install from Github:
library("remotes")
install_github("cran/rSEA")
Install by package version:
library("remotes")
install_version("rSEA", "2.1.1")
Attach the package and use:
library("rSEA")
Maintained by
Mitra Ebrahimpoor
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-02-21
Latest Update: 2020-03-23
Description:
SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to the threshold c", where c is selected by the user. Family-wise error rate control is provided through use of closed testing with Simes test. For more information on closed testing with Simes see Goeman et al. (2019) <doi:10.1093/biomet/asz041> and for more information about the properties and performance of SEA procedure see Ebrahimpoor et al. (2019) <doi:10.1093/bib/bbz074>.
How to cite:
Mitra Ebrahimpoor (2019). rSEA: Simultaneous Enrichment Analysis. R package version 2.1.1, https://cran.r-project.org/web/packages/rSEA
Previous versions and publish date:
Other packages that cited rSEA R package
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Other R packages that rSEA depends,
imports, suggests or enhances
Functions, R codes and Examples using
the rSEA R package
Some associated functions: SEA . plotSEA . rSEA-package . setTDP . setTest . topSEA .
Some associated R codes: plotsea.R . sea.R . settdp.R . settest.R . topsea.R . Full rSEA package functions and examples
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