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rSEA  

Simultaneous Enrichment Analysis
View on CRAN: Click here


Download and install rSEA package within the R console
Install from CRAN:
install.packages("rSEA")

Install from Github:
library("remotes")
install_github("cran/rSEA")

Install by package version:
library("remotes")
install_version("rSEA", "2.1.2")



Attach the package and use:
library("rSEA")
Maintained by
Mitra Ebrahimpoor
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-02-21
Latest Update: 2020-03-23
Description:
SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to the threshold c", where c is selected by the user. Family-wise error rate control is provided through use of closed testing with Simes test. For more information on closed testing with Simes see Goeman et al. (2019) and for more information about the properties and performance of SEA procedure see Ebrahimpoor et al. (2019) .
How to cite:
Mitra Ebrahimpoor (2019). rSEA: Simultaneous Enrichment Analysis. R package version 2.1.2, https://cran.r-project.org/web/packages/rSEA. Accessed 06 Nov. 2024.
Previous versions and publish date:
1.0.1 (2019-02-21 16:00), 1.0 (2018-11-30 17:50), 2.0.0 (2019-10-03 13:40), 2.1.0 (2019-10-06 23:40), 2.1.1 (2020-03-23 12:30)
Other packages that cited rSEA R package
View rSEA citation profile
Other R packages that rSEA depends, imports, suggests or enhances
Complete documentation for rSEA
Functions, R codes and Examples using the rSEA R package
Some associated functions: SEA . plotSEA . rSEA-package . setTDP . setTest . topSEA . 
Some associated R codes: plotsea.R . sea.R . settdp.R . settest.R . topsea.R .  Full rSEA package functions and examples
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