Other packages > Find by keyword >

rSEA  

Simultaneous Enrichment Analysis
View on CRAN: Click here


Download and install rSEA package within the R console
Install from CRAN:
install.packages("rSEA")

Install from Github:
library("remotes")
install_github("cran/rSEA")

Install by package version:
library("remotes")
install_version("rSEA", "2.1.2")



Attach the package and use:
library("rSEA")
Maintained by
Mitra Ebrahimpoor
[Scholar Profile | Author Map]
First Published: 2018-11-30
Latest Update: 2020-03-23
Description:
SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to the threshold c", where c is selected by the user. Family-wise error rate control is provided through use of closed testing with Simes test. For more information on closed testing with Simes see Goeman et al. (2019) and for more information about the properties and performance of SEA procedure see Ebrahimpoor et al. (2019) .
How to cite:
Mitra Ebrahimpoor (2018). rSEA: Simultaneous Enrichment Analysis. R package version 2.1.2, https://cran.r-project.org/web/packages/rSEA. Accessed 16 Apr. 2025.
Previous versions and publish date:
1.0.1 (2019-02-21 16:00), 1.0 (2018-11-30 17:50), 2.0.0 (2019-10-03 13:40), 2.1.0 (2019-10-06 23:40), 2.1.1 (2020-03-23 12:30)
Other packages that cited rSEA R package
View rSEA citation profile
Other R packages that rSEA depends, imports, suggests or enhances
Complete documentation for rSEA
Functions, R codes and Examples using the rSEA R package
Some associated functions: SEA . plotSEA . rSEA-package . setTDP . setTest . topSEA . 
Some associated R codes: plotsea.R . sea.R . settdp.R . settest.R . topsea.R .  Full rSEA package functions and examples
Downloads during the last 30 days
03/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/3003/3104/0104/0204/0304/0404/0504/0604/0704/0804/0904/1004/1104/1204/1304/14Downloads for rSEA0102030405060TrendBars

Today's Hot Picks in Authors and Packages

hkclustering  
Ensemble Clustering using K Means and Hierarchical Clustering
Implements an ensemble algorithm for clustering combining a k-means and a hierarchical clustering ap ...
Download / Learn more Package Citations See dependency  
apache.sedona  
R Interface for Apache Sedona
R interface for 'Apache Sedona' based on 'sparklyr' (). ...
Download / Learn more Package Citations See dependency  
MultiKink  
Estimation and Inference for Multi-Kink Quantile Regression
Estimation and inference for multiple kink quantile regression for longitudinal data and the i.i.d d ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
MM4LMM  
Inference of Linear Mixed Models Through MM Algorithm
The main function MMEst() performs (Restricted) Maximum Likelihood in a variance component mixed mod ...
Download / Learn more Package Citations See dependency  
datadictionary  
Create a Data Dictionary
Creates a data dictionary from any dataframe or tibble in your R environment. You can opt to add va ...
Download / Learn more Package Citations See dependency  

24,012

R Packages

207,311

Dependencies

64,993

Author Associations

24,013

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA