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rPDBapi
View on CRAN: Click
here
Download and install rPDBapi package within the R console
Install from CRAN:
install.packages("rPDBapi")
Install from Github:
library("remotes")
install_github("cran/rPDBapi") Install by package version:
library("remotes")
install_version("rPDBapi", "2.1.2") Attach the package and use:
library("rPDBapi")
Maintained by
Selcuk Korkmaz
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-01-17
Latest Update: 2024-10-19
Description:
Streamlines the interaction with the RCSB Protein Data Bank (PDB) . This interface offers an intuitive and
powerful tool for searching and retrieving a diverse range of data types from the PDB. It includes advanced functionalities like
BLAST and sequence motif queries. Built upon the existing XML-based API of the PDB, it simplifies the creation of custom requests,
thereby enhancing usability and flexibility for researchers.
How to cite:
Selcuk Korkmaz (2024). rPDBapi: A Comprehensive Interface for Accessing the Protein Data Bank. R package version 2.1.2, https://cran.r-project.org/web/packages/rPDBapi. Accessed 04 Jun. 2026.
Previous versions and publish date:
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Other R packages that rPDBapi depends,
imports, suggests or enhances
Complete documentation for rPDBapi
Functions, R codes and Examples using
the rPDBapi R package
Some associated functions: ChemicalOperator . ComparisonOperator . ContainsPhraseOperator . ContainsWordsOperator . DefaultOperator . ExactMatchOperator . ExistsOperator . FastaSequence . InOperator . QueryGroup . QueryNode . RangeOperator . RequestOptions . ScoredResult . SeqMotifOperator . SequenceOperator . StructureOperator . add_property . autoresolve_sequence_type . data_fetcher . describe_chemical . fetch_data . find_papers . find_results . generate_json_query . get_fasta_from_rcsb_entry . get_info . get_pdb_file . infer_search_service . parse_fasta_text_to_list . perform_search . query_search . rPDBapi-package . return_data_as_dataframe . search_graphql . walk_nested_dict .
Some associated R codes: 00_globals.R . ChemicalOperator.R . SeqMotifOperator.R . SequenceOperator.R . StructureOperator.R . TextOperators.R . add_property.R . data_fetcher.R . describe_chemical.R . fetch_data.R . find_papers.R . find_results.R . generate_json_query.R . get_fasta_from_rcsb_entry.R . get_info.R . get_pdb_file.R . parse_fasta_text_to_list.R . perform_search.R . query_search.R . rPDBapi-package.R . return_data_as_dataframe.R . search_client.R . search_graphql.R . walk_nested_dict.R . Full rPDBapi package functions and examples
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