Other packages > Find by keyword >

rMVP  

Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS Tool
View on CRAN: Click here


Download and install rMVP package within the R console
Install from CRAN:
install.packages("rMVP")

Install from Github:
library("remotes")
install_github("cran/rMVP")

Install by package version:
library("remotes")
install_version("rMVP", "1.1.1")



Attach the package and use:
library("rMVP")
Maintained by
Xiaolei Liu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-08-30
Latest Update: 2023-09-01
Description:
A memory-efficient, visualize-enhanced, parallel-accelerated Genome-Wide Association Study (GWAS) tool. It can (1) effectively process large data, (2) rapidly evaluate population structure, (3) efficiently estimate variance components several algorithms, (4) implement parallel-accelerated association tests of markers three methods, (5) globally efficient design on GWAS process computing, (6) enhance visualization of related information. 'rMVP' contains three models GLM (Alkes Price (2006) ), MLM (Jianming Yu (2006) ) and FarmCPU (Xiaolei Liu (2016) ); variance components estimation methods EMMAX (Hyunmin Kang (2008) ;), FaSTLMM (method: Christoph Lippert (2011) , R implementation from 'GAPIT2': You Tang and Xiaolei Liu (2016) and 'SUPER': Qishan Wang and Feng Tian (2014) ), and HE regression (Xiang Zhou (2017) ).
How to cite:
Xiaolei Liu (2019). rMVP: Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS Tool. R package version 1.1.1, https://cran.r-project.org/web/packages/rMVP. Accessed 21 Dec. 2024.
Previous versions and publish date:
0.99.15 (2019-08-30 09:30), 0.99.16 (2019-09-24 12:10), 0.99.17 (2019-10-18 15:10), 0.99.18 (2020-03-19 19:00), 1.0.0 (2020-05-07 17:10), 1.0.3 (2020-07-17 10:30), 1.0.4 (2020-09-01 14:30), 1.0.5 (2021-03-02 16:40), 1.0.6 (2021-04-18 16:50), 1.0.7 (2023-09-01 10:30), 1.0.8 (2023-11-27 10:20), 1.1.1 (2024-08-31 16:50)
Other packages that cited rMVP R package
View rMVP citation profile
Other R packages that rMVP depends, imports, suggests or enhances
Complete documentation for rMVP
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

SEIRfansy  
Extended Susceptible-Exposed-Infected-Recovery Model
Extended Susceptible-Exposed-Infected-Recovery Model for handling high false negative rate and symp ...
Download / Learn more Package Citations See dependency  
CIFsmry  
Weighted summary of cumulative incidence functions
Estimate of cumulative incidence function in two samples. Provide weighted summary statistics based ...
Download / Learn more Package Citations See dependency  
condGEE  
Parameter Estimation in Conditional GEE for Recurrent Event Gap Times
Solves for the mean parameters, the variance parameter, and their asymptotic variance in a condition ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
helda  
Preprocess Data and Get Better Insights from Machine Learning Models
The main focus is on preprocessing and data visualization of machine learning models performances.So ...
Download / Learn more Package Citations See dependency  
batteryreduction  
An R Package for Data Reduction by Battery Reduction
Battery reduction is a method used in data reduction. It uses Gram-Schmidt orthogonal rotations to f ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA