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rChEA3  

R Client for the 'ChEA3' Transcription Factor Enrichment API
View on CRAN: Click here


Download and install rChEA3 package within the R console
Install from CRAN:
install.packages("rChEA3")

Install from Github:
library("remotes")
install_github("cran/rChEA3")

Install by package version:
library("remotes")
install_version("rChEA3", "0.2.0")



Attach the package and use:
library("rChEA3")
Maintained by
Christophe Tav
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-10-15
Latest Update: 2025-10-15
Description:
Interface to the 'ChEA3' transcription factor enrichment API. 'ChEA3' integrates evidence from ChIP-seq, co-expression, and literature resources to prioritize transcription factors regulating a given set of genes. This package provides convenient R functions to query the API, retrieve ranked results across collections (including integrated scores), and standardize output for downstream analysis in R/Bioconductor workflows. See <https://maayanlab.cloud/chea3/> or Keenan (2019) <doi:10.1093/nar/gkz446> for further details.
How to cite:
Christophe Tav (2025). rChEA3: R Client for the 'ChEA3' Transcription Factor Enrichment API. R package version 0.2.0, https://cran.r-project.org/web/packages/rChEA3. Accessed 06 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:47), 0.2.0 (2025-10-15 21:10)
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Complete documentation for rChEA3
Functions, R codes and Examples using the rChEA3 R package
Full rChEA3 package functions and examples
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