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rCNV  

Detect Copy Number Variants from SNPs Data
View on CRAN: Click here


Download and install rCNV package within the R console
Install from CRAN:
install.packages("rCNV")

Install from Github:
library("remotes")
install_github("cran/rCNV")

Install by package version:
library("remotes")
install_version("rCNV", "1.3.0")



Attach the package and use:
library("rCNV")
Maintained by
Piyal Karunarathne
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-04-06
Latest Update: 2023-08-08
Description:
Functions in this package will import filtered variant call format (VCF) files of SNPs data and generate data sets to detect copy number variants, visualize them and do downstream analyses with copy number variants(e.g. Environmental association analyses).
How to cite:
Piyal Karunarathne (2022). rCNV: Detect Copy Number Variants from SNPs Data. R package version 1.3.0, https://cran.r-project.org/web/packages/rCNV. Accessed 03 Feb. 2025.
Previous versions and publish date:
1.0.0 (2022-04-06 09:50), 1.1.0 (2022-10-26 18:12), 1.2.0 (2023-08-08 13:10)
Other packages that cited rCNV R package
View rCNV citation profile
Other R packages that rCNV depends, imports, suggests or enhances
Complete documentation for rCNV
Functions, R codes and Examples using the rCNV R package
Some associated functions: ADnorm . ADtable . ad.correct . allele.freq . allele.info . alleleINF . cnv . cpm.normal . depthVsSample . dup.plot . dup.validate . dupGet . exportVCF . get.miss . gt.format . h.zygosity . hetTgen . maf . norm.fact . power.bias . readVCF . relatedness . sig.hets . sim.als . vcf.stat . vst . 
Some associated R codes: TMM_normalz.R . allele_tests.R . bias.det.R . data.R . detect.R . exportVCF.R . post_detect.R . raw_process.R . sim.als.R . statistics.R .  Full rCNV package functions and examples
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