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r3dmol
View on CRAN: Click
here
Download and install r3dmol package within the R console
Install from CRAN:
install.packages("r3dmol")
Install from Github:
library("remotes")
install_github("cran/r3dmol")
Install by package version:
library("remotes")
install_version("r3dmol", "0.1.2")
Attach the package and use:
library("r3dmol")
Maintained by
Wei Su
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-10-26
Latest Update: 2021-03-14
Description:
Create rich and fully interactive 3D visualizations of molecular data. Visualizations can be included in Shiny apps and R markdown documents, or viewed from the R console and 'RStudio' Viewer. 'r3dmol' includes an extensive API to manipulate the visualization after creation, and supports getting data out of the visualization into R. Based on the '3dmol.js' and the 'htmlwidgets' R package.
How to cite:
Wei Su (2020). r3dmol: Create Interactive 3D Visualizations of Molecular Data. R package version 0.1.2, https://cran.r-project.org/web/packages/r3dmol
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Other R packages that r3dmol depends,
imports, suggests or enhances
Functions, R codes and Examples using
the r3dmol R package
Some associated functions: add_model . cif_254385 . cube_benzene_homo . dot-m_multi_spec . init . m_add_anyShape . m_add_arrow . m_add_as_one_molecule . m_add_custom . m_add_cylinder . m_add_isosurface . m_add_label . m_add_line . m_add_models_as_frames . m_add_outline . m_add_property_labels . m_add_res_labels . m_add_shape . m_add_sphere . m_add_style . m_add_surface . m_animate . m_bio3d . m_button . m_center . m_clear . m_create_model_from . m_enable_fog . m_fetch_pdb . m_get_model . m_glimpse . m_grid . m_is_animated . m_multi_resi_sel . m_png . m_remove_all_labels . m_remove_all_models . m_remove_all_shapes . m_remove_all_surfaces . m_remove_label . m_render . m_rotate . m_sel . m_set_color_by_element . m_set_default_cartoon_quality . m_set_hover_duration . m_set_preceived_distance . m_set_projection . m_set_slab . m_set_style . m_set_view . m_set_viewer . m_set_zoom_limits . m_shape_spec . m_shiny_demo . m_spin . m_stop_animate . m_style_cartoon . m_style_label . m_style_line . m_style_sphere . m_style_stick . m_style_surface . m_translate . m_unit_cell . m_vector3 . m_vibrate . m_viewer_spec . m_zoom . m_zoom_to . pdb_1j72 . pdb_6zsl . r3dmol-shiny . reexports . sdf_multiple . xyz_multiple .
Some associated R codes: add.R . animation.R . bio3d.R . button.R . common.R . constructor.R . data.R . example.R . get.R . glimpse.R . grid.R . multi.R . options.R . r3dmol.R . rd.R . remove.R . save.R . sel.R . set.R . style.R . utils.R . Full r3dmol package functions and examples
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