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r3dmol  

Create Interactive 3D Visualizations of Molecular Data
View on CRAN: Click here


Download and install r3dmol package within the R console
Install from CRAN:
install.packages("r3dmol")

Install from Github:
library("remotes")
install_github("cran/r3dmol")

Install by package version:
library("remotes")
install_version("r3dmol", "0.1.2")



Attach the package and use:
library("r3dmol")
Maintained by
Wei Su
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-10-26
Latest Update: 2021-03-14
Description:
Create rich and fully interactive 3D visualizations of molecular data. Visualizations can be included in Shiny apps and R markdown documents, or viewed from the R console and 'RStudio' Viewer. 'r3dmol' includes an extensive API to manipulate the visualization after creation, and supports getting data out of the visualization into R. Based on the '3dmol.js' and the 'htmlwidgets' R package.
How to cite:
Wei Su (2020). r3dmol: Create Interactive 3D Visualizations of Molecular Data. R package version 0.1.2, https://cran.r-project.org/web/packages/r3dmol. Accessed 06 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:47), 0.1.0 (2020-10-26 10:20), 0.1.1 (2021-02-15 19:10)
Other packages that cited r3dmol R package
View r3dmol citation profile
Other R packages that r3dmol depends, imports, suggests or enhances
Complete documentation for r3dmol
Functions, R codes and Examples using the r3dmol R package
Some associated functions: add_model . cif_254385 . cube_benzene_homo . dot-m_multi_spec . init . m_add_anyShape . m_add_arrow . m_add_as_one_molecule . m_add_custom . m_add_cylinder . m_add_isosurface . m_add_label . m_add_line . m_add_models_as_frames . m_add_outline . m_add_property_labels . m_add_res_labels . m_add_shape . m_add_sphere . m_add_style . m_add_surface . m_animate . m_bio3d . m_button . m_center . m_clear . m_create_model_from . m_enable_fog . m_fetch_pdb . m_get_model . m_glimpse . m_grid . m_is_animated . m_multi_resi_sel . m_png . m_remove_all_labels . m_remove_all_models . m_remove_all_shapes . m_remove_all_surfaces . m_remove_label . m_render . m_rotate . m_sel . m_set_color_by_element . m_set_default_cartoon_quality . m_set_hover_duration . m_set_preceived_distance . m_set_projection . m_set_slab . m_set_style . m_set_view . m_set_viewer . m_set_zoom_limits . m_shape_spec . m_shiny_demo . m_spin . m_stop_animate . m_style_cartoon . m_style_label . m_style_line . m_style_sphere . m_style_stick . m_style_surface . m_translate . m_unit_cell . m_vector3 . m_vibrate . m_viewer_spec . m_zoom . m_zoom_to . pdb_1j72 . pdb_6zsl . r3dmol-shiny . reexports . sdf_multiple . xyz_multiple . 
Some associated R codes: add.R . animation.R . bio3d.R . button.R . common.R . constructor.R . data.R . example.R . get.R . glimpse.R . grid.R . multi.R . options.R . r3dmol.R . rd.R . remove.R . save.R . sel.R . set.R . style.R . utils.R .  Full r3dmol package functions and examples
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