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qtl2fst
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Download and install qtl2fst package within the R console
Install from CRAN:
install.packages("qtl2fst")
Install from Github:
library("remotes")
install_github("cran/qtl2fst") Install by package version:
library("remotes")
install_version("qtl2fst", "0.30") Attach the package and use:
library("qtl2fst")
Maintained by
Karl W Broman
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All associated links for this package
First Published: 2020-07-30
Latest Update: 2024-11-23
Description:
Uses the 'fst' package to store genotype probabilities on disk for the 'qtl2' package. These genotype probabilities are a central data object for mapping quantitative trait loci (QTL), but they can be quite large. The facilities in this package enable the genotype probabilities to be stored on disk, leading to reduced memory usage with only a modest increase in computation time.
How to cite:
Karl W Broman (2020). qtl2fst: Database Storage of Genotype Probabilities for QTL Mapping. R package version 0.30, https://cran.r-project.org/web/packages/qtl2fst. Accessed 25 Jun. 2026.
Previous versions and publish date:
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Complete documentation for qtl2fst
Functions, R codes and Examples using
the qtl2fst R package
Some associated functions: calc_genoprob_fst . cbind.fst_genoprob . fst_extract . fst_files . fst_path . fst_restore . genoprob_to_alleleprob_fst . probs2fst . rbind.fst_genoprob . replace_path . subset_fst_genoprob . summary.fst_genoprob .
Some associated R codes: calc_genoprob_fst.R . cbind_fst_genoprob.R . cluster_util.R . fst_extract.R . fst_files.R . fst_genoprob.R . fst_path.R . fst_restore.R . genoprob_to_alleleprob_fst.R . rbind_fst_genoprob.R . subset_fst_genoprob.R . summary.R . Full qtl2fst package functions and examples
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