R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
qtl2
View on CRAN: Click
here
Download and install qtl2 package within the R console
Install from CRAN:
install.packages("qtl2")
Install from Github:
library("remotes")
install_github("cran/qtl2") Install by package version:
library("remotes")
install_version("qtl2", "0.38") Attach the package and use:
library("qtl2")
Maintained by
Karl W Broman
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-06-26
Latest Update: 2025-06-02
Description:
Provides a set of tools to perform quantitative
trait locus (QTL) analysis in experimental crosses. It is a
reimplementation of the 'R/qtl' package to better handle
high-dimensional data and complex cross designs.
Broman et al. (2019) .
How to cite:
Karl W Broman (2020). qtl2: Quantitative Trait Locus Mapping in Experimental Crosses. R package version 0.38, https://cran.r-project.org/web/packages/qtl2. Accessed 07 Mar. 2026.
Previous versions and publish date:
Other packages that cited qtl2 R package
View qtl2 citation profile
Other R packages that qtl2 depends,
imports, suggests or enhances
Complete documentation for qtl2
Functions, R codes and Examples using
the qtl2 R package
Some associated functions: CCcolors . add_threshold . basic_summaries . batch_cols . batch_vec . bayes_int . calc_entropy . calc_errorlod . calc_geno_freq . calc_genoprob . calc_grid . calc_het . calc_kinship . calc_raw_founder_maf . calc_raw_geno_freq . calc_raw_het . calc_raw_maf . calc_sdp . cbind.calc_genoprob . cbind.scan1 . cbind.scan1perm . cbind.sim_geno . cbind.viterbi . cbind_expand . check_cross2 . chisq_colpairs . chr_lengths . clean . clean_genoprob . clean_scan1 . compare_geno . compare_genoprob . compare_maps . convert2cross2 . count_xo . create_gene_query_func . create_snpinfo . create_variant_query_func . decomp_kinship . drop_markers . drop_nullmarkers . est_herit . est_map . find_dup_markers . find_ibd_segments . find_index_snp . find_map_gaps . find_marker . find_markerpos . find_peaks . fit1 . fread_csv . fread_csv_numer . genoprob_to_alleleprob . genoprob_to_snpprob . get_common_ids . get_x_covar . guess_phase . index_snps . insert_pseudomarkers . interp_genoprob . interp_map . invert_sdp . locate_xo . lod_int . map_to_grid . mat2strata . max_compare_geno . max_scan1 . maxlod . maxmarg . n_missing . plot_coef . plot_compare_geno . plot_genes . plot_genoprob . plot_genoprobcomp . plot_lodpeaks . plot_onegeno . plot_peaks . plot_pxg . plot_scan1 . plot_sdp . plot_snpasso . predict_snpgeno . print.cross2 . print.summary.scan1perm . probs_to_grid . pull_genoprobint . pull_genoprobpos . pull_markers . qtl2-internal . qtl2-package . qtl2version . rbind.calc_genoprob . rbind.scan1 . rbind.scan1perm . rbind.sim_geno . rbind.viterbi . read_cross2 . read_pheno . recode_snps . reduce_map_gaps . reduce_markers . replace_ids . scale_kinship . scan1 . scan1blup . scan1coef . scan1max . scan1perm . scan1snps . sdp2char . sim_geno . smooth_gmap . subset.calc_genoprob . subset.cross2 . subset.sim_geno . subset.viterbi . subset_scan1 . summary.cross2 . summary_compare_geno . summary_scan1perm . top_snps . unsmooth_gmap . viterbi . write_control_file . xpos_scan1 . zip_datafiles .
Some associated R codes: CCcolors-data.R . RcppExports.R . add_threshold.R . align_scan1_map.R . arg_util.R . assign_allele_codes.R . batch_cols.R . batch_vec.R . bayes_int.R . calc_entropy.R . calc_errorlod.R . calc_geno_freq.R . calc_genoprob.R . calc_genoprob2.R . calc_grid.R . calc_het.R . calc_kinship.R . calc_raw_summaries.R . calc_sdp.R . cbind_calc_genoprob.R . cbind_expand.R . cbind_scan1.R . cbind_sim_geno.R . cbind_viterbi.R . check_cross2.R . chisq_colpairs.R . chr_lengths.R . clean.R . clean_genoprob.R . clean_scan1.R . cluster_util.R . compare_geno.R . compare_genoprob.R . compare_maps.R . convert2cross2.R . count_xo.R . covariates.R . create_gene_query_func.R . create_marker_index.R . create_snpinfo.R . create_variant_query_func.R . decomp_kinship.R . dim_calc_genoprob.R . drop_markers.R . est_herit.R . est_map.R . find_common_ids.R . find_dup_markers.R . find_ibd_segments.R . find_index_snp.R . find_map_gaps.R . find_marker.R . find_markerpos.R . find_peaks.R . find_peaks_and_bayesint.R . find_peaks_and_lodint.R . fit1.R . fit1_pg.R . fread_csv.R . fread_csv_numer.R . genoprob_col2drop.R . genoprob_to_alleleprob.R . genoprob_to_snpprob.R . get_common_ids.R . get_x_covar.R . guess_phase.R . hmm_util.R . index_snps.R . insert_pseudomarkers.R . interp_genoprob.R . interp_map.R . is_phase_known.R . is_same.R . kinship_util.R . locate_xo.R . lod_int.R . map_functions.R . map_to_grid.R . mat2strata.R . max_scan1.R . maxmarg.R . myround.R . n_missing.R . plot_coef.R . plot_coef_and_lod.R . plot_genes.R . plot_genoprob.R . plot_genoprobcomp.R . plot_lodpeaks.R . plot_onegeno.R . plot_peaks.R . plot_pxg.R . plot_scan1.R . plot_sdp.R . plot_snpasso.R . plot_snpasso_and_genes.R . plot_snpasso_and_sdp.R . plot_snpasso_sdp_and_genes.R . predict_snpgeno.R . probs_to_grid.R . pull_genoprobint.R . pull_genoprobpos.R . qtl2-internal.R . qtl2-package.R . qtl2version.R . rbind_calc_genoprob.R . rbind_scan1.R . rbind_sim_geno.R . rbind_viterbi.R . rcbind_scan1perm.R . read_cross2.R . read_pheno.R . recode_snps.R . reduce_map_gaps.R . reduce_markers.R . reduce_to_index_snps.R . replace_ids.R . scale_kinship.R . scan1.R . scan1_binary.R . scan1_pg.R . scan1blup.R . scan1blup_pg.R . scan1coef.R . scan1coef_pg.R . scan1max.R . scan1max_pg.R . scan1perm.R . scan1perm_pg.R . scan1snps.R . sim_geno.R . sim_geno2.R . smooth_gmap.R . snpprob_from_cross.R . subset_calc_genoprob.R . subset_chr.R . subset_cross2.R . subset_ind.R . subset_kinship.R . subset_scan1.R . subset_sim_geno.R . subset_viterbi.R . summary_cross2.R . summary_scan1perm.R . swap_colname.R . test_util.R . top_snps.R . unsmooth_gmap.R . viridis.R . viterbi.R . viterbi2.R . weights_util.R . write_control_file.R . xpos_scan1.R . zip_datafiles.R . Full qtl2 package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
prepdat
Prepares data for statistical analysis (e.g., analysis of variance
;ANOVA) by enabling the user to ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Ayala S. Allon (view profile)
factoextra
Provides some easy-to-use functions to extract and visualize the
output of multivariate data analys ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Alboukadel Kassambara (view profile)
RobPer
Calculates periodograms based on (robustly) fitting periodic functions to light curves (irregularly ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Jonathan Rathjens (view profile)
didrooRFM
This hosts the findRFM function which generates RFM scores on a 1-5 point scale for
customer transa ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Satish Hariharan (view profile)
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
momentfit
Several classes for moment-based models are defined. The classes are defined for moment conditions d ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Pierre Chausse (view profile)
26,270
R Packages
223,360
Dependencies
70,376
Author Associations
26,265
Publication Badges
