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qgg
View on CRAN: Click
here
Download and install qgg package within the R console
Install from CRAN:
install.packages("qgg")
Install from Github:
library("remotes")
install_github("cran/qgg") Install by package version:
library("remotes")
install_version("qgg", "1.1.6") Attach the package and use:
library("qgg")
Maintained by
Peter Soerensen
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-12-13
Latest Update: 2024-12-16
Description:
Provides an infrastructure for efficient processing of large-scale genetic and phenotypic data including core functions for: 1) fitting linear mixed models, 2) constructing marker-based genomic relationship matrices, 3) estimating genetic parameters (heritability and correlation), 4) performing genomic prediction and genetic risk profiling, and 5) single or multi-marker association analyses.
Rohde et al. (2019) .
How to cite:
Peter Soerensen (2019). qgg: Statistical Tools for Quantitative Genetic Analyses. R package version 1.1.6, https://cran.r-project.org/web/packages/qgg. Accessed 07 Mar. 2026.
Previous versions and publish date:
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Complete documentation for qgg
Functions, R codes and Examples using
the qgg R package
Some associated functions: acc . adjLD . adjLDStat . adjStat . adjustB . adjustMapLD . auc . computeROC . gbayes . gblup . getG . getGRM . getLD . getLDsets . getMap . getMarkers . getPos . getSparseLD . gfilter . glma . gmap . gprep . greml . grm . gscore . gsea . gsim . gsolve . hwe . ldsc . ldscore . mapSets . mapStat . mergeGRM . mtadj . plotBayes . plotForest . plotLD . plotROC . predict_auc_mt_cc . predict_auc_mt_continuous . predict_auc_st . predict_r2_mt . predict_r2_st . qcStat . rnag . splitWithOverlap .
Some associated R codes: RcppExports.R . compute_grm.R . genomic_bayes.R . genomic_correlation.R . genomic_matrix.R . genomic_reml.R . genomic_score.R . genomic_simulation.R . genomic_solve.R . genomic_statistics.R . multiple_marker_test.R . qgg.R . qgg_utility_functions.R . single_marker_test.R . Full qgg package functions and examples
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