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purgeR
View on CRAN: Click
here
Download and install purgeR package within the R console
Install from CRAN:
install.packages("purgeR")
Install from Github:
library("remotes")
install_github("cran/purgeR") Install by package version:
library("remotes")
install_version("purgeR", "1.8.2") Attach the package and use:
library("purgeR")
Maintained by
Eugenio López-Cortegano
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-04-30
Latest Update: 2023-11-28
Description:
Inbreeding-purging analysis of pedigreed populations, including the computation of the inbreeding coefficient, partial, ancestral and purged inbreeding coefficients, and measures of the opportunity of purging related to the individual reduction of inbreeding load.
In addition, functions to calculate the effective population size and other parameters relevant to population genetics are included.
See L
How to cite:
Eugenio López-Cortegano (2021). purgeR: Inbreeding-Purging Estimation in Pedigreed Populations. R package version 1.8.2, https://cran.r-project.org/web/packages/purgeR. Accessed 08 Mar. 2026.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for purgeR
Functions, R codes and Examples using
the purgeR R package
Some associated functions: F . Fa . Fij_core . Fij_core_i_cpp . Ne_delta . ancestors . arrui . atlas . check_Fcol . check_Ne . check_ancestors . check_basic . check_bool . check_col . check_d . check_df . check_index . check_int . check_length . check_na . check_names . check_not_col . check_nrows . check_order . check_reference . check_repeat_id . check_tcol . check_types . check_zero_id . dama . darwin . delta_Fi . dorcas . exp_F . exp_Fa . exp_g . g . hwd . idx_ancestors . ip_F . ip_Fa . ip_Fij . ip_g . ip_op . map_ancestors . op . ped_clean . ped_graph . ped_maternal . ped_rename . ped_sort . ped_sort_i . pop_Nancestors . pop_Ne . pop_hwd . pop_t . purgeR . reproductive_value . sample_allele . search_ancestors . w_grandoffspring . w_offspring . w_reproductive_value .
Some associated R codes: Nancestors.R . Ne.R . RcppExports.R . check.R . clean.R . data.R . expected.R . fitness.R . generations.R . igraph.R . import.R . inbreeding.R . maternal.R . mating.R . opurging.R . partial.R . purgeR.R . rename.R . sort.R . zzz.R . Full purgeR package functions and examples
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