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pubtatordb  

Create and Query a Local 'PubTator' Database
View on CRAN: Click here


Download and install pubtatordb package within the R console
Install from CRAN:
install.packages("pubtatordb")

Install from Github:
library("remotes")
install_github("cran/pubtatordb")

Install by package version:
library("remotes")
install_version("pubtatordb", "0.1.4")



Attach the package and use:
library("pubtatordb")
Maintained by
Zachary Colburn
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-03-13
Latest Update: 2019-11-22
Description:
'PubTator' is a National Center for Biotechnology Information (NCBI) tool that enhances the annotation of articles on PubMed . It makes it possible to rapidly identify potential relationships between genes or proteins using text mining techniques. In contrast, manually searching for and reading the annotated articles would be very time consuming. 'PubTator' offers both an online interface and a RESTful API, however, neither of these approaches are well suited for frequent, high-throughput analyses. The package 'pubtatordb' provides a set of functions that make it easy for the average R user to download 'PubTator' annotations, create, and then query a local version of the database.
How to cite:
Zachary Colburn (2019). pubtatordb: Create and Query a Local 'PubTator' Database. R package version 0.1.4, https://cran.r-project.org/web/packages/pubtatordb. Accessed 12 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:44), 0.1.3 (2019-03-13 17:00), 0.1.4 (2019-11-22 20:30)
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Complete documentation for pubtatordb
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