Other packages > Find by keyword >

pubtatordb  

Create and Query a Local 'PubTator' Database
View on CRAN: Click here


Download and install pubtatordb package within the R console
Install from CRAN:
install.packages("pubtatordb")

Install from Github:
library("remotes")
install_github("cran/pubtatordb")

Install by package version:
library("remotes")
install_version("pubtatordb", "0.1.4")



Attach the package and use:
library("pubtatordb")
Maintained by
Zachary Colburn
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-03-13
Latest Update: 2019-11-22
Description:
'PubTator' is a National Center for Biotechnology Information (NCBI) tool that enhances the annotation of articles on PubMed . It makes it possible to rapidly identify potential relationships between genes or proteins using text mining techniques. In contrast, manually searching for and reading the annotated articles would be very time consuming. 'PubTator' offers both an online interface and a RESTful API, however, neither of these approaches are well suited for frequent, high-throughput analyses. The package 'pubtatordb' provides a set of functions that make it easy for the average R user to download 'PubTator' annotations, create, and then query a local version of the database.
How to cite:
Zachary Colburn (2019). pubtatordb: Create and Query a Local 'PubTator' Database. R package version 0.1.4, https://cran.r-project.org/web/packages/pubtatordb. Accessed 10 Jun. 2026.
Previous versions and publish date:
0.1.3 (2019-03-13 17:00), 0.1.4 (2019-11-22 20:30)
Other packages that cited pubtatordb R package
View pubtatordb citation profile
Other R packages that pubtatordb depends, imports, suggests or enhances
Complete documentation for pubtatordb
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
mixtox  
Dose Response Curve Fitting and Mixture Toxicity Assessment
Curve Fitting of monotonic(sigmoidal) & non-monotonic(J-shaped) dose-response data. Predicting mixt ...
Download / Learn more Package Citations See dependency  
seeclickfixr  
Access Data from the SeeClickFix Web API
Provides a wrapper to access data from the SeeClickFix web API for R. SeeClickFix is a central plat ...
Download / Learn more Package Citations See dependency  
cmvnorm  
The Complex Multivariate Gaussian Distribution
Various utilities for the complex multivariate Gaussian distribution and complex Gaussian processes. ...
Download / Learn more Package Citations See dependency  
hagis  
Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity
Analysis of plant pathogen pathotype survey data. Functions provided calculate distribution of sus ...
Download / Learn more Package Citations See dependency  
sparseR  
Variable Selection under Ranked Sparsity Principles for Interactions and Polynomials
An implementation of ranked sparsity methods, including penalized regression methods such as the spa ...
Download / Learn more Package Citations See dependency  

27,372

R Packages

233,548

Dependencies

72,820

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA