Other packages > Find by keyword >

pubtatordb  

Create and Query a Local 'PubTator' Database
View on CRAN: Click here


Download and install pubtatordb package within the R console
Install from CRAN:
install.packages("pubtatordb")

Install from Github:
library("remotes")
install_github("cran/pubtatordb")

Install by package version:
library("remotes")
install_version("pubtatordb", "0.1.4")



Attach the package and use:
library("pubtatordb")
Maintained by
Zachary Colburn
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-03-13
Latest Update: 2019-11-22
Description:
'PubTator' is a National Center for Biotechnology Information (NCBI) tool that enhances the annotation of articles on PubMed . It makes it possible to rapidly identify potential relationships between genes or proteins using text mining techniques. In contrast, manually searching for and reading the annotated articles would be very time consuming. 'PubTator' offers both an online interface and a RESTful API, however, neither of these approaches are well suited for frequent, high-throughput analyses. The package 'pubtatordb' provides a set of functions that make it easy for the average R user to download 'PubTator' annotations, create, and then query a local version of the database.
How to cite:
Zachary Colburn (2019). pubtatordb: Create and Query a Local 'PubTator' Database. R package version 0.1.4, https://cran.r-project.org/web/packages/pubtatordb. Accessed 02 Sep. 2026.
Previous versions and publish date:
(2026-07-09 06:44), 0.1.3 (2019-03-13 17:00), 0.1.4 (2019-11-22 20:30)
Other packages that cited pubtatordb R package
View pubtatordb citation profile
Other R packages that pubtatordb depends, imports, suggests or enhances
Complete documentation for pubtatordb
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

recmap  
Compute the Rectangular Statistical Cartogram
Implements the RecMap MP2 construction heuristic . This algorithm draw ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
VIM  
Visualization and Imputation of Missing Values
New tools for the visualization of missing and/or imputed values are introduced, which can be used f ...
Download / Learn more Package Citations See dependency  
multicmp  
Flexible Modeling of Multivariate Count Data via the Multivariate Conway-Maxwell-Poisson Distribution
A toolkit containing statistical analysis models motivated by multivariate forms of the Conway-Maxwe ...
Download / Learn more Package Citations See dependency  
ggsci  
Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'
A collection of 'ggplot2' color palettes inspired by plots in scientific journals, data visualizati ...
Download / Learn more Package Citations See dependency  

28,437

R Packages

239,283

Dependencies

75,283

Author Associations

28,438

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA