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pubmed.mineR  

Text Mining of PubMed Abstracts
View on CRAN: Click here


Download and install pubmed.mineR package within the R console
Install from CRAN:
install.packages("pubmed.mineR")

Install from Github:
library("remotes")
install_github("cran/pubmed.mineR")

Install by package version:
library("remotes")
install_version("pubmed.mineR", "1.0.20")



Attach the package and use:
library("pubmed.mineR")
Maintained by
S. Ramachandran
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-03-18
Latest Update: 2021-11-26
Description:
Text mining of PubMed Abstracts (text and XML) from .
How to cite:
S. Ramachandran (2014). pubmed.mineR: Text Mining of PubMed Abstracts. R package version 1.0.20, https://cran.r-project.org/web/packages/pubmed.mineR
Previous versions and publish date:
1.0.1 (2014-03-18 09:25), 1.0.2.1 (2014-12-20 11:48), 1.0.2 (2014-08-26 07:47), 1.0.3.1 (2015-02-06 07:13), 1.0.3 (2014-12-26 09:09), 1.0.4 (2015-06-24 11:15), 1.0.5 (2016-02-18 06:51), 1.0.6 (2017-01-04 10:56), 1.0.7 (2017-01-05 14:45), 1.0.8 (2017-02-09 10:18), 1.0.9 (2017-04-25 07:46), 1.0.10 (2017-07-03 11:36), 1.0.11 (2017-09-12 07:19), 1.0.12 (2018-04-12 14:56), 1.0.13 (2018-08-17 09:40), 1.0.14 (2019-02-12 07:00), 1.0.15 (2019-05-06 09:20), 1.0.16 (2019-07-23 09:40), 1.0.17 (2021-01-07 20:50), 1.0.18 (2021-07-26 12:30), 1.0.19 (2021-11-26 16:50), 1.0 (2014-03-13 08:07)
Other packages that cited pubmed.mineR R package
View pubmed.mineR citation profile
Other R packages that pubmed.mineR depends, imports, suggests or enhances
Functions, R codes and Examples using the pubmed.mineR R package
Some associated functions: Abstracts-class . BWI . Find_conclusion . GeneToEntrez . Genewise-methods . Genewise . Give_Sentences . Give_Sentences_PMC . HGNC-class . HGNC2UniprotID . HGNCdata . SentenceToken . Yearwise-methods . Yearwise . additional_info . alias_fn . altnamesfun . cleanabs-methods . cleanabs . cluster_words . co_occurrence_advance . co_occurrence_fn . combineabs-methods . combineabs . common_words_new . contextSearch-methods . contextSearch . cos_sim_calc . cos_sim_calc_boot . currentabs_fn . find_intro_conc_html . gene_atomization . genes_BWI . get_DOIs . get_MedlinePlus . get_NMids . get_PMCIDS . get_PMCtable . get_Sequences . get_gene_sentences . get_original_term . get_original_term2 . getabs-methods . getabs . getabsT-methods . getabsT . head_abbrev . input_for_find_intro_conc_html . local_uniprotfun . names_fn . new_xmlreadabs . official_fn . pmids_to_abstracts . previousabs_fn . prevsymbol_fn . printabs . pubtator_function . pubtator_function_JSON . pubtator_result_list_to_table . readabs . readabsnew . ready . removeabs-methods . removeabs . searchabsL-methods . searchabsL . searchabsT-methods . searchabsT . sendabs-methods . sendabs . space_quasher . subabs-methods . subabs . subsetabs-methods . subsetabs . tdm_for_lsa . uniprotfun . whichcluster . word_associations . word_atomizations . wordscluster . wordsclusterview . xmlgene_atomizations . xmlgene_atomizations_new . xmlreadabs . xmlword_atomizations . 
Some associated R codes: Abstracts-class.R . BWI.R . Find_conclusion.R . Genewise.R . Give_Sentences.R . Give_Sentences_PMC.R . HGNC-class.R . SentenceToken.R . Yearwise.R . additional_info.R . alias_fn.R . altnamesfun.R . cleanabs.R . cluster_words.R . co_occurrence_advance.R . co_occurrence_fn.R . combineabs.R . contextSearch.R . cos_sim_calc.R . cos_sim_calc_boot.R . currentabs_fn.R . find_intro_conc_html.R . gene_atomization.R . genes_BWI.R . get_DOIs.R . get_MedlinePlus.R . get_NMids.R . get_PMCIDS.R . get_PMCtable.R . get_Sequences.R . get_gene_sentences.R . get_original_term.R . get_original_term2.R . getabs.R . getabsT.R . gethgnc.R . head_abbrev.R . input_for_find_intro_conc_html.R . local_uniprotfun.R . names_fn.R . new_xmlreadabs.R . official_fn.R . pmids_to_abstracts.R . previousabs_fn.R . prevsymbol_fn.R . printabs.R . pubtator_function.R . pubtator_function_JSON.R . pubtator_result_list_to_table.R . readabs.R . readabsnew.R . ready.R . removeabs.R . searchabsL.R . searchabsT.R . sendabs.R . space_quasher.R . subabs.R . subsetabs.R . tdm_for_lsa.R . uniprotfun.R . whichcluster.R . word_associations.R . word_atomizations.R . wordscluster.R . wordsclusterview.R . xmlgene_atomizations.R . xmlgene_atomizations_new.R . xmlreadabs.R . xmlword_atomizations.R .  Full pubmed.mineR package functions and examples
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