R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
ptm
View on CRAN: Click
here
Download and install ptm package within the R console
Install from CRAN:
install.packages("ptm")
Install from Github:
library("remotes")
install_github("cran/ptm")
Install by package version:
library("remotes")
install_version("ptm", "1.0.1")
Attach the package and use:
library("ptm")
Maintained by
Juan Carlos Aledo
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-12-16
Latest Update: 2022-08-07
Description:
Contains utilities for the analysis of post-translational modifications (PTMs) in proteins,
with particular emphasis on the sulfoxidation of methionine residues. Features include the ability to download,
filter and analyze data from the sulfoxidation database 'MetOSite', and integrate data from other main PTMs
(other databases). Utilities to search and characterize S-aromatic motifs in proteins are also provided.
In addition, functions to analyze sequence environments around modifiable residues in proteins can be found.
For instance, 'ptm' allows to search for amino acids either overrepresented or avoided around the modifiable
residues from the proteins of interest. Functions tailored to test statistical hypothesis related to
these differential sequence environments are also implemented. A number of utilities to assess the effect
of the modification/mutation of a given residue on the protein stability, have also been included in this package.
Further and detailed information regarding the methods in this package can be found in (Aledo (2020) ).
How to cite:
Juan Carlos Aledo (2020). ptm: Analyses of Protein Post-Translational Modifications. R package version 1.0.1, https://cran.r-project.org/web/packages/ptm. Accessed 21 Nov. 2024.
Previous versions and publish date:
Other packages that cited ptm R package
View ptm citation profile
Other R packages that ptm depends,
imports, suggests or enhances
Complete documentation for ptm
Functions, R codes and Examples using
the ptm R package
Some associated functions: aa.at . aa.comp . abundance . ac.scan . acc.dssp . atom.dpx . bg.go . ddG.profile . ddG.ptm . dis.scan . dot-get.exepath . dot-get.url . dpx . env.Ztest . env.extract . env.matrices . env.plot . find.aaindex . foldx.assembly . foldx.mut . foldx.stab . get.area . get.go . get.seq . gl.scan . gracefully_fail . hdfisher.go . hmeto . id.features . id.mapping . imutant . is.at . kegg.uniprot . me.scan . meto.list . meto.scan . meto.search . mkdssp . msa . net.go . ni.scan . p.scan . pairwise.dist . parse.dssp . pdb.chain . pdb.quaternary . pdb.select . pdb.seq . pdb.uniprot . pdb2uniprot . prot2codon . ptm.plot . ptm.scan . reg.scan . renum.meto . renum . renum.pdb . res.dpx . saro.dist . saro.geometry . saro.motif . search.go . sni.scan . species.kegg . species.mapping . stru.part . su.scan . term.go . ub.scan . uniprot.kegg . uniprot.pdb . uniprot2pdb . xprod .
Some associated R codes: Non-Exportable-Functions.R . aa.R . abundance.R . accdpx.R . ddG.R . distances.R . environment.R . evolutionary.R . getseq.R . go.R . gracefully.R . hmeto.R . metosite.R . ptmScan.R . ptmplot.R . saromatic.R . Full ptm package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
deductive
Attempt to repair inconsistencies and missing values in
data records by using information from vali ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Mark van der Loo (view profile)
kgschart
Restore underlining numeric data from rating history graph of
KGS (an online platform of the game o ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Kota Mori (view profile)
crossrun
Joint distribution of number of crossings and the
longest run in a series of independent Bernoulli ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Tore Wentzel-Larsen (view profile)
RcppHNSW
'Hnswlib' is a C++ library for Approximate Nearest Neighbors.
This package provides a minimal R int ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: James Melville (view profile)
SCBiclust
Identifies a bicluster, a submatrix of the data such that the features and observations within the s ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Erika S. Helgeson (view profile)