Other packages > Find by keyword >

ptm  

Analyses of Protein Post-Translational Modifications
View on CRAN: Click here


Download and install ptm package within the R console
Install from CRAN:
install.packages("ptm")

Install from Github:
library("remotes")
install_github("cran/ptm")

Install by package version:
library("remotes")
install_version("ptm", "1.0.1")



Attach the package and use:
library("ptm")
Maintained by
Juan Carlos Aledo
[Scholar Profile | Author Map]
First Published: 2020-12-16
Latest Update: 2022-08-07
Description:
Contains utilities for the analysis of post-translational modifications (PTMs) in proteins, with particular emphasis on the sulfoxidation of methionine residues. Features include the ability to download, filter and analyze data from the sulfoxidation database 'MetOSite', and integrate data from other main PTMs (other databases). Utilities to search and characterize S-aromatic motifs in proteins are also provided. In addition, functions to analyze sequence environments around modifiable residues in proteins can be found. For instance, 'ptm' allows to search for amino acids either overrepresented or avoided around the modifiable residues from the proteins of interest. Functions tailored to test statistical hypothesis related to these differential sequence environments are also implemented. A number of utilities to assess the effect of the modification/mutation of a given residue on the protein stability, have also been included in this package. Further and detailed information regarding the methods in this package can be found in (Aledo (2020) ).
How to cite:
Juan Carlos Aledo (2020). ptm: Analyses of Protein Post-Translational Modifications. R package version 1.0.1, https://cran.r-project.org/web/packages/ptm. Accessed 29 Mar. 2025.
Previous versions and publish date:
0.2.2 (2020-12-16 17:00), 0.2.3 (2021-05-09 09:30), 0.2.4 (2021-05-24 09:20), 0.2.5 (2022-02-14 20:40), 0.2.6 (2022-08-07 17:20), 0.2.7 (2024-05-09 16:30)
Other packages that cited ptm R package
View ptm citation profile
Other R packages that ptm depends, imports, suggests or enhances
Complete documentation for ptm
Downloads during the last 30 days
02/2702/2803/0103/0203/0303/0403/0503/0603/0703/0803/0903/1003/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/28Downloads for ptm02468101214161820222426TrendBars

Today's Hot Picks in Authors and Packages

landmix  
Landmark Prediction for Mixture Data
Non-parametric prediction of survival outcomes for mixture data that incorporates covariates and a l ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
gglgbtq  
Show Pride on 'ggplot2' Plots
Provides multiple palettes based on pride flags with tailored themes. ...
Download / Learn more Package Citations See dependency  

23,842

R Packages

207,311

Dependencies

64,420

Author Associations

23,781

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA