Other packages > Find by keyword >

ptm  

Analyses of Protein Post-Translational Modifications
View on CRAN: Click here


Download and install ptm package within the R console
Install from CRAN:
install.packages("ptm")

Install from Github:
library("remotes")
install_github("cran/ptm")

Install by package version:
library("remotes")
install_version("ptm", "1.0.1")



Attach the package and use:
library("ptm")
Maintained by
Juan Carlos Aledo
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-12-16
Latest Update: 2024-05-21
Description:
Contains utilities for the analysis of post-translational modifications (PTMs) in proteins, with particular emphasis on the sulfoxidation of methionine residues. Features include the ability to download, filter and analyze data from the sulfoxidation database 'MetOSite', and integrate data from other main PTMs (other databases). Utilities to search and characterize S-aromatic motifs in proteins are also provided. In addition, functions to analyze sequence environments around modifiable residues in proteins can be found. For instance, 'ptm' allows to search for amino acids either overrepresented or avoided around the modifiable residues from the proteins of interest. Functions tailored to test statistical hypothesis related to these differential sequence environments are also implemented. A number of utilities to assess the effect of the modification/mutation of a given residue on the protein stability, have also been included in this package. Further and detailed information regarding the methods in this package can be found in (Aledo (2020) ).
How to cite:
Juan Carlos Aledo (2020). ptm: Analyses of Protein Post-Translational Modifications. R package version 1.0.1, https://cran.r-project.org/web/packages/ptm. Accessed 28 Oct. 2026.
Previous versions and publish date:
(2026-07-09 06:44), 0.2.2 (2020-12-16 17:00), 0.2.3 (2021-05-09 09:30), 0.2.4 (2021-05-24 09:20), 0.2.5 (2022-02-14 20:40), 0.2.6 (2022-08-07 17:20), 0.2.7 (2024-05-09 16:30)
Other packages that cited ptm R package
View ptm citation profile
Other R packages that ptm depends, imports, suggests or enhances
Complete documentation for ptm
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
ncdf4  
Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files
Provides a high-level R interface to data files written using Unidata's netCDF library (version 4 or ...
Download / Learn more Package Citations See dependency  
msamp  
Estimate Sample Size to Detect Bacterial Contamination in a Product Lot
Estimates the sample size needed to detect microbial contamination in a lot with a user-specified d ...
Download / Learn more Package Citations See dependency  
cats  
Cohort Platform Trial Simulation
Cohort plAtform Trial Simulation whereby every cohort consists of two arms, control and experimenta ...
Download / Learn more Package Citations See dependency  
NPHazardRate  
Nonparametric Hazard Rate Estimation
Provides functions and examples for histogram, kernel (classical, variable bandwidth and transformat ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA