Other packages > Find by keyword >

psSubpathway  

Flexible Identification of Phenotype-Specific Subpathways
View on CRAN: Click here


Download and install psSubpathway package within the R console
Install from CRAN:
install.packages("psSubpathway")

Install from Github:
library("remotes")
install_github("cran/psSubpathway")

Install by package version:
library("remotes")
install_version("psSubpathway", "0.1.3")



Attach the package and use:
library("psSubpathway")
Maintained by
Junwei Han
[Scholar Profile | Author Map]
First Published: 2019-06-21
Latest Update: 2023-08-09
Description:
A network-based systems biology tool for flexible identification of phenotype-specific subpathways in the cancer gene expression data with multiple categories (such as multiple subtype or developmental stages of cancer). Subtype Set Enrichment Analysis (SubSEA) and Dynamic Changed Subpathway Analysis (DCSA) are developed to flexible identify subtype specific and dynamic changed subpathways respectively. The operation modes include extraction of subpathways from biological pathways, inference of subpathway activities in the context of gene expression data, identification of subtype specific subpathways with SubSEA, identification of dynamic changed subpathways associated with the cancer developmental stage with DCSA, and visualization of the activities of resulting subpathways by using box plots and heat maps. Its capabilities render the tool could find the specific abnormal subpathways in the cancer dataset with multi-phenotype samples.
How to cite:
Junwei Han (2019). psSubpathway: Flexible Identification of Phenotype-Specific Subpathways. R package version 0.1.3, https://cran.r-project.org/web/packages/psSubpathway. Accessed 29 Mar. 2025.
Previous versions and publish date:
0.1.0 (2019-06-21 09:20), 0.1.1 (2019-10-02 14:40), 0.1.2 (2023-08-09 12:50)
Other packages that cited psSubpathway R package
View psSubpathway citation profile
Other R packages that psSubpathway depends, imports, suggests or enhances
Complete documentation for psSubpathway
Downloads during the last 30 days
02/2702/2803/0103/0203/0303/0403/0503/0603/0703/0803/1003/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/28Downloads for psSubpathway0123456789101112TrendBars

Today's Hot Picks in Authors and Packages

gglgbtq  
Show Pride on 'ggplot2' Plots
Provides multiple palettes based on pride flags with tailored themes. ...
Download / Learn more Package Citations See dependency  
landmix  
Landmark Prediction for Mixture Data
Non-parametric prediction of survival outcomes for mixture data that incorporates covariates and a l ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

23,842

R Packages

207,311

Dependencies

64,420

Author Associations

23,781

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA